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SCNpilot_expt_1000_bf_scaffold_2126_curated

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2126_curated_1
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

456..845
DNA (390bp) protein (130aa)
phosphoribosylformylglycinamidine synthase II; K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
Phosphoribosylformylglycinamidine synthase subunit PurL {ECO:0000255|HAMAP-Rule:MF_00420}; Short=FGAM synthase {ECO:0000255|HAMAP-Rule:MF_00420};; EC=6.3.5.3 {ECO:0000255|HAMAP-Rule:MF_00420};; Formylglycinamide ribonucleotide amidotransferase subunit II {ECO:0000255|HAMAP-Rule:MF_00420}; Short=FGAR amidotransferase II {ECO:0000255|HAMAP-Rule:MF_00420};; Short=FGAR-AT II {ECO:0000255|HAMAP-Rule:MF_00420};; Glutamine amidotransferase PurL {ECO:0000255|HAMAP-Rule:MF_00420}; Phosphoribosylformylglycinamidine s
Phosphoribosylformylglycinamidine synthase 2 n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=PURL_MESSB
SCNpilot_expt_1000_bf_scaffold_2126_curated_2
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

875..1108
DNA (234bp) protein (78aa)
Transcriptional regulator, BolA protein family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11IV3_MESSB
BolA-like protein
Transcriptional regulator, BolA protein family {ECO:0000313|EMBL:ABG62672.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_2126_curated_3
unknown

Not on your lists

1108..1365
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2126_curated_4
Hyphomonas chukchiensis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1370..2137)
DNA (768bp) protein (256aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ54505.1}; TaxID=1280947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas chukchiensis.;"
SCNpilot_expt_1000_bf_scaffold_2126_curated_5
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2352..3182
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0VS64_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJZ21752.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
cytochrome C class I
SCNpilot_expt_1000_bf_scaffold_2126_curated_6
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3317..3652
DNA (336bp) protein (112aa)
Glutaredoxin n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11IV6_MESSB
glutaredoxin-like protein; K07390 monothiol glutaredoxin
Glutaredoxin {ECO:0000256|PIRNR:PIRNR005894}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_2126_curated_7
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3863..5107
DNA (1245bp) protein (415aa)
Multidrug resistance transporter protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HS39_9RHIZ
Multidrug resistance transporter protein {ECO:0000313|EMBL:EHK56464.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
Bcr/CflA subfamily drug resistance transporter; K07552 MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein
SCNpilot_expt_1000_bf_scaffold_2126_curated_8
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5171..6016)
DNA (846bp) protein (282aa)
tRNA 2-thiocytidine biosynthesis protein TtcA n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HS40_9RHIZ
tRNA 2-thiocytidine biosynthesis protein TtcA {ECO:0000256|HAMAP-Rule:MF_01850}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
tRNA(cytosine32)-2-thiocytidine synthetase; K14058 tRNA 2-thiocytidine biosynthesis protein TtcA
SCNpilot_expt_1000_bf_scaffold_2126_curated_9
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6318..6935)
DNA (618bp) protein (206aa)
30S ribosomal protein S4 n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HS41_9RHIZ
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ribosomal protein S4, bacterial/organelle type
SCNpilot_expt_1000_bf_scaffold_2126_curated_10
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7147..7863)
DNA (717bp) protein (239aa)
Putative amidohydrolase (Isochorismatase) {ECO:0000313|EMBL:CCV04412.1}; EC=3.3.2.1 {ECO:0000313|EMBL:CCV04412.1};; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
amidohydrolase (isochorismatase) (EC:3.3.2.1); K09020 ureidoacrylate peracid hydrolase [EC:3.5.1.110]
Putative amidohydrolase (Isochorismatase) n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EJ79_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2126_curated_11
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8142..8333)
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U3ASH1_9CAUL
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
SCNpilot_expt_1000_bf_scaffold_2126_curated_12
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8408..9193)
DNA (786bp) protein (262aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
glutamate racemase (EC:5.1.1.3); K01776 glutamate racemase [EC:5.1.1.3]
Glutamate racemase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HS48_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2126_curated_13
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9190..10044)
DNA (855bp) protein (285aa)
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256|RuleBase:RU362024}; tRNA Cm32/Um32 methyltransferase {ECO:0000256|RuleBase:RU362024}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
RNA methyltransferase n=1 Tax=Hoeflea sp. 108 RepID=UPI00036A95E2
RNA methyltransferase, TrmH family, group 1
SCNpilot_expt_1000_bf_scaffold_2126_curated_14
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10236..13577
DNA (3342bp) protein (1114aa)
TPR repeat protein n=1 Tax=Candidatus Symbiobacter mobilis CR RepID=U5N4W9_9BURK
TPR repeat protein
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
SCNpilot_expt_1000_bf_scaffold_2126_curated_15
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13719..14930
DNA (1212bp) protein (404aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108};; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
Isocitrate dehydrogenase [NADP] n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KQ29_MESAW
isocitrate dehydrogenase, NADP-dependent
SCNpilot_expt_1000_bf_scaffold_2126_curated_16
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15082..16293)
DNA (1212bp) protein (404aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K00529 ferredoxin--NAD+ reductase [EC:1.18.1.3]
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000375374D
FAD-dependent pyridine nucleotide-disulphide oxidoreductase {ECO:0000313|EMBL:ABY29382.1}; TaxID=419610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain PA1).;"
SCNpilot_expt_1000_bf_scaffold_2126_curated_17
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16416..17567
DNA (1152bp) protein (384aa)
Deoxyribose-phosphate aldolase {ECO:0000256|SAAS:SAAS00058202}; EC=4.1.2.4 {ECO:0000256|SAAS:SAAS00058202};; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
deoxyribose-phosphate aldolase (EC:4.1.2.4); K01619 deoxyribose-phosphate aldolase [EC:4.1.2.4]
UPI0003CFE0FA related cluster n=1 Tax=unknown RepID=UPI0003CFE0FA
SCNpilot_expt_1000_bf_scaffold_2126_curated_18
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

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comp(18081..18551)
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Burkholderia oklahomensis RepID=UPI00016A4106
weak similarity to Azospirillum brasilense CarR protein (CAA49825) involved in regulation of carbohydrate catabolism
Tax=RBG_16_Armatimonadetes_67_12_curated
SCNpilot_expt_1000_bf_scaffold_2126_curated_19
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18922..19989
DNA (1068bp) protein (356aa)
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] rbh
Aldehyde dehydrogenase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJ57_9RHIZ
Aldehyde dehydrogenase {ECO:0000313|EMBL:EHK59220.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_expt_1000_bf_scaffold_2126_curated_20
unknown

Not on your lists

comp(20164..20583)
DNA (420bp) protein (140aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2126_curated_21
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20764..21588
DNA (825bp) protein (275aa)
mazG; nucleoside triphosphate pyrophosphohydrolase (EC:3.6.1.19); K04765 ATP diphosphatase [EC:3.6.1.8] rbh
Nucleoside triphosphate pyrophosphohydrolase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FRR9_9RHIZ
Nucleoside triphosphate pyrophosphohydrolase {ECO:0000313|EMBL:ESX82247.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
SCNpilot_expt_1000_bf_scaffold_2126_curated_22
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21643..23025)
DNA (1383bp) protein (461aa)
GTPase HflX n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HWE5_9RHIZ
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
GTP-binding protein HflX
SCNpilot_expt_1000_bf_scaffold_2126_curated_23
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23026..23274)
DNA (249bp) protein (83aa)
RNA-binding protein Hfq n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HWE4_9RHIZ
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
RNA chaperone Hfq
SCNpilot_expt_1000_bf_scaffold_2126_curated_24
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23414..24277)
DNA (864bp) protein (288aa)
D-amino acid aminotransferase; K00824 D-alanine transaminase [EC:2.6.1.21]
D-alanine aminotransferase apoenzyme {ECO:0000313|EMBL:ABG63009.1}; EC=2.6.1.21 {ECO:0000313|EMBL:ABG63009.1};; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
D-amino acid aminotransferase n=1 Tax=Hoeflea sp. 108 RepID=UPI00036881E8
SCNpilot_expt_1000_bf_scaffold_2126_curated_25
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24325..25701)
DNA (1377bp) protein (459aa)
Potassium transporter peripheral membrane component n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M844_9RHIZ
Potassium transporter peripheral membrane component {ECO:0000313|EMBL:EKF18366.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
trkA; potassium transporter peripheral membrane protein; K03499 trk system potassium uptake protein TrkA
SCNpilot_expt_1000_bf_scaffold_2126_curated_26
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25708..25899)
DNA (192bp) protein (64aa)
ATPase AAA n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F8B101
two component, sigma54 specific, Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX
Sigma-54 factor interaction domain-containing protein {ECO:0000313|EMBL:EHK54983.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_expt_1000_bf_scaffold_2126_curated_27
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

26277..26678
DNA (402bp) protein (134aa)
Tax=GWC2_Gemmatimonadetes_71_10_curated
SCNpilot_expt_1000_bf_scaffold_2126_curated_28
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26964..29249)
DNA (2286bp) protein (762aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
PAS sensor protein; K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
PAS sensor protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HWD9_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2126_curated_29
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29354..30817)
DNA (1464bp) protein (488aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YCR6_MESOW
Fis family two component sigma-54 specific transcriptional regulator; K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG
Nitrogen assimilation regulatory protein {ECO:0000313|EMBL:CDX35749.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
SCNpilot_expt_1000_bf_scaffold_2126_curated_30
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30814..31770)
DNA (957bp) protein (319aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
nitrogen reguration protein nirB protein; K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] rbh
UPI0003CE54A1 related cluster n=1 Tax=unknown RepID=UPI0003CE54A1
Displaying items 1-30 of 40 in total

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