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SCNpilot_expt_1000_bf_scaffold_8019_curated

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8019_curated_1
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..583
DNA (582bp) protein (194aa)
inositol-phosphate phosphatase (EC:3.1.3.25); K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
Inositol monophosphatase/fructose-1,6-bisphosphatase family protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YXK3_9RHIZ
Inositol monophosphatase/fructose-1,6-bisphosphatase family protein {ECO:0000313|EMBL:EIM28695.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
SCNpilot_expt_1000_bf_scaffold_8019_curated_2
Oceanicola granulosus, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

637..1911
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CGN0_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAR51905.1}; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola granulosus (strain ATCC BAA-861 / DSM 15982 / KCTC 12143 /; HTCC2516).;"
extracellular solute-binding protein
SCNpilot_expt_1000_bf_scaffold_8019_curated_3
Oceanicola granulosus, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1943..2827
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CGN1_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAR51904.1}; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola granulosus (strain ATCC BAA-861 / DSM 15982 / KCTC 12143 /; HTCC2516).;"
binding-protein-dependent transport systems inner membrane component
SCNpilot_expt_1000_bf_scaffold_8019_curated_4
Oceanicola granulosus, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2824..3708
DNA (885bp) protein (295aa)
Sugar ABC transporter permease n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CGN2_9RHOB
Sugar ABC transporter permease {ECO:0000313|EMBL:EAR51903.1}; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola granulosus (strain ATCC BAA-861 / DSM 15982 / KCTC 12143 /; HTCC2516).;"
binding-protein-dependent transporters inner membrane component; K02026 multiple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_8019_curated_5
unknown

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comp(4015..4116)
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8019_curated_6
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4392..4811
DNA (420bp) protein (140aa)
sugar ABC transporter ATP-binding protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037A09B9
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB84399.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
ABC transporter ATP-binding protein y4oS
SCNpilot_expt_1000_bf_scaffold_8019_curated_7
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4872..6491
DNA (1620bp) protein (540aa)
L-fucose isomerase n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3HYW9_9RHIZ
L-fucose isomerase {ECO:0000313|EMBL:EMG52852.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
L-fucose isomerase
SCNpilot_expt_1000_bf_scaffold_8019_curated_8
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6608..7012
DNA (405bp) protein (135aa)
Signal peptide protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FSQ2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX16453.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8019_curated_9
Pseudomonas sp. CF149, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7080..8111)
DNA (1032bp) protein (344aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037D11DE
Putative iron-binding periplasmic protein {ECO:0000313|EMBL:EPJ93412.1}; TaxID=911239 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. CF149.;"
extracellular solute-binding protein; K02012 iron(III) transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_8019_curated_10
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8215..9060)
DNA (846bp) protein (282aa)
Universal stress protein n=3 Tax=Oligotropha carboxidovorans RepID=B6JE49_OLICO
Universal stress protein {ECO:0000256|PIRNR:PIRNR006276}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
universal stress protein
SCNpilot_expt_1000_bf_scaffold_8019_curated_11
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9153..10382
DNA (1230bp) protein (410aa)
Putative fosmidomycin resistance protein n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YKV8_MOBAS
Putative fosmidomycin resistance protein {ECO:0000313|EMBL:EAS50415.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
major facilitator superfamily transporter
SCNpilot_expt_1000_bf_scaffold_8019_curated_12
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10404..10895)
DNA (492bp) protein (164aa)
isoprenylcysteine carboxyl methyltransferase; protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036BC464
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGJ63372.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
SCNpilot_expt_1000_bf_scaffold_8019_curated_13
unknown

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11512..11643
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8019_curated_14
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11770..12444)
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031D151F
Uncharacterized protein {ECO:0000313|EMBL:EPR22737.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
Lectin-like protein BA14k
SCNpilot_expt_1000_bf_scaffold_8019_curated_15
unknown

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13717..14622
DNA (906bp) protein (302aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8019_curated_16
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14704..15546
DNA (843bp) protein (281aa)
GntR family transcriptional regulator n=1 Tax=Ralstonia sp. PBA RepID=I9BV21_9RALS
GntR family transcriptional regulator {ECO:0000313|EMBL:EIZ03748.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_8019_curated_17
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15543..16583
DNA (1041bp) protein (347aa)
Putative exported protein n=1 Tax=Bordetella parapertussis (strain Bpp5) RepID=K0MIU8_BORPB
Uncharacterized protein {ECO:0000313|EMBL:EWT04988.1}; TaxID=584657 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8019_curated_18
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16580..17377
DNA (798bp) protein (266aa)
taurine-transporting AtPase (EC:3.6.3.36); K02049 NitT/TauT family transport system ATP-binding protein
ABC transporter related protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QEW8_9BRAD
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ETR76812.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
SCNpilot_expt_1000_bf_scaffold_8019_curated_19
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17374..18204
DNA (831bp) protein (277aa)
ABC-type nitrate/sulfonate/bicarbonate transport system n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QEW9_9BRAD
ABC transporter permease {ECO:0000313|EMBL:ETR76813.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
sulfonate/nitrate/taurine ABC transporter permease
SCNpilot_expt_1000_bf_scaffold_8019_curated_20
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18219..19733
DNA (1515bp) protein (505aa)
apeH; dipeptidyl aminopeptidase/acylaminoacyl peptidase (EC:3.4.19.1)
Dipeptidyl aminopeptidase/acylaminoacyl peptidase {ECO:0000313|EMBL:CCH89062.1}; EC=3.4.19.1 {ECO:0000313|EMBL:CCH89062.1};; TaxID=1144889 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI00037097F2
Displaying 20 items

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