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SCNpilot_expt_1000_bf_scaffold_3200_curated

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3200_curated_1
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27..725
DNA (699bp) protein (233aa)
chemotaxis protein CheY n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F42673
response regulator receiver; K07659 two-component system, OmpR family, phosphate regulon response regulator OmpR
Response regulator receiver {ECO:0000313|EMBL:ADV11327.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_3200_curated_2
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

872..2275
DNA (1404bp) protein (468aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
ATPase domain-containing protein; K07638 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
Sensor protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FEX0_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3200_curated_3
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2259..3476)
DNA (1218bp) protein (406aa)
Adenylate/guanylate cyclase/hydrolase, alpha/beta fold family protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VIF4_9RHOB
Adenylate/guanylate cyclase/hydrolase, alpha/beta fold family protein {ECO:0000313|EMBL:EAQ11885.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter alkaliphilus HTCC2654.;"
lysine decarboxylase transcriptional regulator CadC
SCNpilot_expt_1000_bf_scaffold_3200_curated_4
unknown

Not on your lists

3613..3789
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3200_curated_5
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3821..4096)
DNA (276bp) protein (92aa)
UPI0003CE3CB2 related cluster n=1 Tax=unknown RepID=UPI0003CE3CB2
Putative transcriptional regulator {ECO:0000313|EMBL:ETA72693.1}; TaxID=935547 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium loti R7A.;"
helix-turn-helix domain-containing protein
SCNpilot_expt_1000_bf_scaffold_3200_curated_6
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4286..4642)
DNA (357bp) protein (119aa)
Chaperone n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HPA0_9RHIZ
Protein CsaA {ECO:0000313|EMBL:CDX63442.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
chaperone; K06878 tRNA-binding protein
SCNpilot_expt_1000_bf_scaffold_3200_curated_7
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4647..5147)
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002ED5100
Putative uncharacterized protein {ECO:0000313|EMBL:EHK57485.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3200_curated_8
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5460..5765)
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003659C6C
hypothetical protein; K09806 hypothetical protein
Mll2675 protein {ECO:0000313|EMBL:BAB49746.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_1000_bf_scaffold_3200_curated_9
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5897..6748
DNA (852bp) protein (284aa)
prolipoprotein diacylglyceryl transferase; K13292 phosphatidylglycerol:prolipoprotein diacylglycerol transferase [EC:2.-.-.-]
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
Prolipoprotein diacylglyceryl transferase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11GD3_MESSB
SCNpilot_expt_1000_bf_scaffold_3200_curated_10
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6745..7833
DNA (1089bp) protein (363aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037A8CFF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG63543.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_3200_curated_11
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7883..8710
DNA (828bp) protein (276aa)
UPI0003CDD406 related cluster n=1 Tax=unknown RepID=UPI0003CDD406
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
hypothetical protein; K05810 conserved hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3200_curated_12
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8710..9861
DNA (1152bp) protein (384aa)
Peptidase M24 n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YEG6_MESOW
Peptidase M24 {ECO:0000313|EMBL:CDX15875.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
peptidase M24
SCNpilot_expt_1000_bf_scaffold_3200_curated_13
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9957..10634
DNA (678bp) protein (226aa)
UPI0003D06741 related cluster n=1 Tax=unknown RepID=UPI0003D06741
Uncharacterized protein {ECO:0000313|EMBL:ESZ18924.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3200_curated_14
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10693..10914)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D6H9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AKI00267.1}; Flags: Precursor;; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3200_curated_15
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11332..12264
DNA (933bp) protein (311aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source=
ribose-phosphate pyrophosphokinase; K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
Ribose-phosphate pyrophosphokinase n=1 Tax=Nitratireductor indicus C115 RepID=K2P0A5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3200_curated_16
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12687..13553
DNA (867bp) protein (289aa)
UPI0003D006C0 related cluster n=1 Tax=unknown RepID=UPI0003D006C0
Uncharacterized protein {ECO:0000313|EMBL:ESZ13651.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
diguanylate cyclase
SCNpilot_expt_1000_bf_scaffold_3200_curated_17
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14083..14838
DNA (756bp) protein (252aa)
Fosmidomycin resistance protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036723BB
Arabinose efflux permease family protein {ECO:0000313|EMBL:EJN02420.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
fosmidomycin resistance protein
SCNpilot_expt_1000_bf_scaffold_3200_curated_18
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


15034..15681
DNA (648bp) protein (216aa)
50S ribosomal protein L25 n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KJC8_MESAW
ribosomal protein L25, Ctc-form
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_expt_1000_bf_scaffold_3200_curated_19
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15717..16436
DNA (720bp) protein (240aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
UPI0003D05FCF related cluster n=1 Tax=unknown RepID=UPI0003D05FCF
SCNpilot_expt_1000_bf_scaffold_3200_curated_20
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16536..17063
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037C82E9
Dihydrofolate reductase {ECO:0000313|EMBL:EMG54058.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
cytochrome C biogenesis protein CcmH
SCNpilot_expt_1000_bf_scaffold_3200_curated_21
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17130..17405
DNA (276bp) protein (92aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HP84_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK57470.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_expt_1000_bf_scaffold_3200_curated_22
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17392..17841
DNA (450bp) protein (150aa)
PilT-like protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HP83_9RHIZ
PilT-like protein {ECO:0000313|EMBL:EHK57469.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
PilT protein domain-containing protein
SCNpilot_expt_1000_bf_scaffold_3200_curated_23
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17854..18957
DNA (1104bp) protein (368aa)
GTP-binding protein YchF n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D5221B
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ychF; GTP-dependent nucleic acid-binding protein EngD; K06942
SCNpilot_expt_1000_bf_scaffold_3200_curated_24
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19118..20089
DNA (972bp) protein (324aa)
UPI0003CFC099 related cluster n=1 Tax=unknown RepID=UPI0003CFC099
Magnesium transport protein CorA {ECO:0000256|RuleBase:RU362010}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
magnesium and cobalt transport protein CorA; K03284 magnesium transporter
SCNpilot_expt_1000_bf_scaffold_3200_curated_25
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19977..20780)
DNA (804bp) protein (268aa)
Carbonic anhydrase {ECO:0000313|EMBL:CDP53359.1}; EC=4.2.1.1 {ECO:0000313|EMBL:CDP53359.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
carbonic anhydrase; K01673 carbonic anhydrase [EC:4.2.1.1]
Carbonic anhydrase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QR90_NITHX
SCNpilot_expt_1000_bf_scaffold_3200_curated_26
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20967..21428
DNA (462bp) protein (154aa)
MaoC domain-containing protein dehydratase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HP80_9RHIZ
MaoC domain-containing protein dehydratase {ECO:0000313|EMBL:EHK57466.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3200_curated_27
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21425..21898
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F69A54
MaoC family dehydratase {ECO:0000313|EMBL:ESY71401.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
MaoC domain-containing protein dehydratase
SCNpilot_expt_1000_bf_scaffold_3200_curated_28
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21902..22528
DNA (627bp) protein (209aa)
SAM-dependent methyltransferase n=1 Tax=Rhizobium leguminosarum RepID=UPI00037039DD
Methyltransferase small {ECO:0000313|EMBL:EJT05312.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
methyltransferase small
SCNpilot_expt_1000_bf_scaffold_3200_curated_29
unknown

Not on your lists

comp(22659..23099)
DNA (441bp) protein (147aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3200_curated_30
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23258..23803)
DNA (546bp) protein (182aa)
adenine phosphoribosyltransferase; K00759 adenine phosphoribosyltransferase [EC:2.4.2.7]
Adenine phosphoribosyltransferase {ECO:0000255|HAMAP-Rule:MF_00004}; Short=APRT {ECO:0000255|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000255|HAMAP-Rule:MF_00004};; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
Adenine phosphoribosyltransferase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=APT_MESSB rbh
Displaying items 1-30 of 32 in total

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