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SCNpilot_expt_1000_bf_scaffold_3744_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3744_curated_1
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(4..438)
DNA (435bp) protein (145aa)
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
SCNpilot_expt_1000_bf_scaffold_3744_curated_2
Mesorhizobium sp. LSJC269B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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660..1043
DNA (384bp) protein (128aa)
UPI0003CFB1DE related cluster n=1 Tax=unknown RepID=UPI0003CFB1DE
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=1287326 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC269B00.;"
cell division protein FtsZ
SCNpilot_expt_1000_bf_scaffold_3744_curated_3
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1320..2270
DNA (951bp) protein (317aa)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase {ECO:0000256|HAMAP-Rule:MF_00388, ECO:0000256|SAAS:SAAS00041388}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_00388, ECO:0000256|SAAS:SAAS00041386};; UDP-3-O-acyl-GlcNAc deacetylase {ECO:0000256|HAMAP-Rule:MF_00388}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
UDP-3-0-acyl N-acetylglucosamine deacetylase; K02535 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HTH1_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3744_curated_4
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2415..3287
DNA (873bp) protein (291aa)
Outer membrane protein assembly factor BamD n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HTH0_9RHIZ
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; Flags: Precursor;; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
putative lipoprotein; K05807 putative lipoprotein
SCNpilot_expt_1000_bf_scaffold_3744_curated_5
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3304..4941
DNA (1638bp) protein (546aa)
UPI0003CFE9E3 related cluster n=1 Tax=unknown RepID=UPI0003CFE9E3
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
DNA repair protein RecN; K03631 DNA repair protein RecN (Recombination protein N)
SCNpilot_expt_1000_bf_scaffold_3744_curated_6
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5058..7274
DNA (2217bp) protein (739aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
DNA ligase; K01972 DNA ligase (NAD+) [EC:6.5.1.2] rbh
DNA ligase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YGM7_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3744_curated_7
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7348..8082
DNA (735bp) protein (245aa)
UPI0003D05CDD related cluster n=1 Tax=unknown RepID=UPI0003D05CDD
AzlC-like protein {ECO:0000313|EMBL:KFB09706.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
putative branched-chain amino acid permease (azaleucine resistance)
SCNpilot_expt_1000_bf_scaffold_3744_curated_8
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8079..8375
DNA (297bp) protein (99aa)
Branched-chain amino acid transport n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C2Z0_9RHIZ
Branched-chain amino acid transport {ECO:0000313|EMBL:EIM76192.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3744_curated_9
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8418..10244)
DNA (1827bp) protein (609aa)
peptidase M24; K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9]
UPI0003CF6A80 related cluster n=1 Tax=unknown RepID=UPI0003CF6A80
X-Pro aminopeptidase {ECO:0000313|EMBL:ESY79758.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
SCNpilot_expt_1000_bf_scaffold_3744_curated_10
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10483..10668
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NZL7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF43379.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3744_curated_11
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10748..11617)
DNA (870bp) protein (290aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
ribosomal L11 methyltransferase; K02687 ribosomal protein L11 methyltransferase [EC:2.1.1.-]
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002DB4899
SCNpilot_expt_1000_bf_scaffold_3744_curated_12
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11640..12215)
DNA (576bp) protein (192aa)
UPI0003CFE165 related cluster n=1 Tax=unknown RepID=UPI0003CFE165
Sco copper chaperone family protein {ECO:0000313|EMBL:ESZ20324.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
electron transport protein SCO1/SenC; K07152
SCNpilot_expt_1000_bf_scaffold_3744_curated_13
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12527..13012
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KMD5_MESAW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB45805.1}; Flags: Precursor;; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_expt_1000_bf_scaffold_3744_curated_14
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13066..13728
DNA (663bp) protein (221aa)
Phosphonate metabolim protein, transferase hexapeptide repeat family n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TF72_MESCW
phosphonate metabolism protein
Phosphonate metabolim protein, transferase hexapeptide repeat family {ECO:0000313|EMBL:ADV12292.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_3744_curated_15
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13959..15176
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QY90_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF60512.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3744_curated_16
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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15408..16853
DNA (1446bp) protein (482aa)
Tetracycline resistance protein TetB n=106 Tax=Brucella abortus RepID=B2SC07_BRUA1
MFS transporter {ECO:0000313|EMBL:KDB05675.1}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas sp. 20V17.;"
transporter; K08169 MFS transporter, DHA2 family, multidrug resistance protein
Displaying 16 items

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