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SCNpilot_expt_1000_bf_scaffold_1017_curated

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1017_curated_1
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52..1476)
DNA (1425bp) protein (475aa)
AMP-dependent synthetase and ligase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IG06_XANP2
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ABS66949.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_1017_curated_2
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1649..2560)
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2K7F6_9PROT
dioxygenase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
SCNpilot_expt_1000_bf_scaffold_1017_curated_3
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2652..4259)
DNA (1608bp) protein (536aa)
Peptide/opine/nickel ABC transporter periplasmic ligand-binding protein n=1 Tax=Nitratireductor indicus C115 RepID=K2N253_9RHIZ
Peptide/opine/nickel ABC transporter periplasmic ligand-binding protein {ECO:0000313|EMBL:EKF41533.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
ABC transporter substrate binding protein; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1017_curated_4
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4710..5978)
DNA (1269bp) protein (423aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002E6739F
D-amino acid oxidase {ECO:0000313|EMBL:KJB95670.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
D-amino acid oxidase
SCNpilot_expt_1000_bf_scaffold_1017_curated_5
unknown

Not on your lists

comp(6357..6560)
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1017_curated_6
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6687..7712)
DNA (1026bp) protein (342aa)
NADPH:quinone reductase (EC:1.6.5.5)
alcohol dehydrogenase n=1 Tax=Rhizobium radiobacter RepID=UPI0003626A23
NADPH:quinone reductase {ECO:0000313|EMBL:CDN51343.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
SCNpilot_expt_1000_bf_scaffold_1017_curated_7
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7734..9560)
DNA (1827bp) protein (609aa)
gamma-glutamyltranspeptidase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
Putative gamma-glutamyltranspeptidase {ECO:0000313|EMBL:CAL76328.1}; EC=2.3.2.2 {ECO:0000313|EMBL:CAL76328.1};; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
Putative gamma-glutamyltranspeptidase n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YR02_BRASO
SCNpilot_expt_1000_bf_scaffold_1017_curated_8
Truepera radiovictrix, Truepera, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(9557..10126)
DNA (570bp) protein (190aa)
Transcriptional regulator, AsnC family n=1 Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CT61_TRURR
AsnC family transcriptional regulator; K03718 Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ADI15524.1}; TaxID=649638 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Trueperaceae; Truepera.;" source="Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 /; RQ-24).;"
SCNpilot_expt_1000_bf_scaffold_1017_curated_9
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

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10351..11406
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Paenibacillus sp. PAMC 26794 RepID=UPI00030B4EC9
spermidine/putrescine-binding periplasmic protein; K02055 putative spermidine/putrescine transport system substrate-binding protein
Tax=RBG_16_Armatimonadetes_67_12_curated
SCNpilot_expt_1000_bf_scaffold_1017_curated_10
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11516..12601
DNA (1086bp) protein (362aa)
spermidine/putrescine ABC transporter ATP-binding subunit; K11072 spermidine/putrescine transport system ATP-binding protein [EC:3.6.3.31]
Spermidine/putrescine import ATP-binding protein PotA n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=POTA_RUBXD
Putrescine transport ATP-binding protein PotA {ECO:0000313|EMBL:CDP52049.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
SCNpilot_expt_1000_bf_scaffold_1017_curated_11
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12594..13502
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=Paenibacillus sp. PAMC 26794 RepID=UPI0002EF78F5
Spermidine Putrescine ABC transporter permease com ponent PotB {ECO:0000313|EMBL:CDP52048.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
ABC transporter permease; K02054 putative spermidine/putrescine transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1017_curated_12
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13505..14338
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Paenibacillus massiliensis RepID=UPI00037C90FE
Spermidine Putrescine ABC transporter permease com ponent potC {ECO:0000313|EMBL:CDP52047.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
binding-protein-dependent transport systems inner membrane component; K02053 putative spermidine/putrescine transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1017_curated_13
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14335..16098
DNA (1764bp) protein (588aa)
Peptidase, M28 family n=1 Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0K7A3_SACES
Uncharacterized protein {ECO:0000313|EMBL:CDP52046.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Peptidase, M28 family
SCNpilot_expt_1000_bf_scaffold_1017_curated_14
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16104..16895
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0K4F2_SACES
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:CDP52045.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1017_curated_15
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16895..17908
DNA (1014bp) protein (338aa)
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; TaxID=1179773 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
2-dehydropantoate 2-reductase n=1 Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0K2C6_SACES
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1017_curated_16
Thioclava sp. 13D2W-2, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17964..19172)
DNA (1209bp) protein (403aa)
acyl-CoA dehydrogenase domain-containing protein; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]
acyl-CoA dehydrogenase n=1 Tax=Hoeflea sp. 108 RepID=UPI00037C1797
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KFE36207.1}; TaxID=1317124 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. 13D2W-2.;"
SCNpilot_expt_1000_bf_scaffold_1017_curated_17
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19187..19936)
DNA (750bp) protein (250aa)
fabG; 3-oxoacyl-ACP reductase (EC:1.1.1.100)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EUF0_9RHIZ
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:CCV07543.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
SCNpilot_expt_1000_bf_scaffold_1017_curated_18
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20084..20773
DNA (690bp) protein (230aa)
Transcriptional regulator, TetR family n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1M4C0_METRJ
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ACB26415.1}; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
SCNpilot_expt_1000_bf_scaffold_1017_curated_19
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20780..21505)
DNA (726bp) protein (242aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Rhizobium sp. CF080 RepID=J2I5Y0_9RHIZ
Branched-chain amino acid ABC transporter ATPase {ECO:0000313|EMBL:KJF70048.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1017_curated_20
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21510..22262)
DNA (753bp) protein (251aa)
Branched-chain amino acid transport ATP-binding protein LivG n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6L7_PELHB
Branched-chain amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:AIC25275.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
branched-chain amino acid transport ATP-binding protein LivG; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1017_curated_21
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22259..23236)
DNA (978bp) protein (326aa)
ABC transporter permease n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E80078
Branched-chain amino acid ABC transporter {ECO:0000313|EMBL:EHK59058.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
transmembrane component of ABC transporter; K01998 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1017_curated_22
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23236..24114)
DNA (879bp) protein (293aa)
High-affinity branched-chain amino acid transport system permease protein LivH n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6L9_PELHB
Branched-chain amino acid ABC transporter permease protein {ECO:0000313|EMBL:AJC77366.1}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
high-affinity branched-chain amino acid transport system permease protein LivH; K01997 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1017_curated_23
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24299..25450)
DNA (1152bp) protein (384aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Rhizobium sp. CF080 RepID=J2H9J0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUB99314.1}; Flags: Precursor;; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
solute-binding component of ABC transporter; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1017_curated_24
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25547..26389)
DNA (843bp) protein (281aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
aroE; shikimate dehydrogenase (EC:1.1.1.25); K00014 shikimate dehydrogenase [EC:1.1.1.25]
Shikimate dehydrogenase n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0BB90_RHILV
SCNpilot_expt_1000_bf_scaffold_1017_curated_25
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26460..28352)
DNA (1893bp) protein (631aa)
4-hydroxyphenylpyruvate dioxygenase {ECO:0000313|EMBL:EUB99312.1}; EC=1.13.11.27 {ECO:0000313|EMBL:EUB99312.1};; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
glyoxalase/dioxygenase; K00457 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
3-keto-5-aminohexanoate cleavage protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000379B455
SCNpilot_expt_1000_bf_scaffold_1017_curated_26
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28349..29221)
DNA (873bp) protein (291aa)
shikimate dehydrogenase; K00014 shikimate dehydrogenase [EC:1.1.1.25]
Shikimate 5-dehydrogenase n=1 Tax=Rhizobium sp. CF080 RepID=J2HUC3_9RHIZ
Shikimate dehydrogenase substrate binding domain protein {ECO:0000313|EMBL:EUB99311.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
SCNpilot_expt_1000_bf_scaffold_1017_curated_27
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29396..30322)
DNA (927bp) protein (309aa)
Putative LysR family transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1MFD6_RHIL3
LysR family transcriptional regulator
Putative LysR family transcriptional regulator {ECO:0000313|EMBL:CAK08338.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_1017_curated_28
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30349..31191)
DNA (843bp) protein (281aa)
2-pyrone-4,6-dicarboxylate hydrolase n=1 Tax=Rhizobium leguminosarum RepID=UPI000364ED73
2-pyrone-4,6-dicarboxylic acid hydrolase
Putative 2-pyrone-4,6-dicarboxylic acid hydrolase {ECO:0000313|EMBL:CAK08339.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_1017_curated_29
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31354..32304
DNA (951bp) protein (317aa)
hypothetical protein n=1 Tax=Promicromonospora sukumoe RepID=UPI000370BBC8
Putative cysteine-type sulfatase aerobic maturase {ECO:0000313|EMBL:ERK72206.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1017_curated_30
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32418..33443
DNA (1026bp) protein (342aa)
Ribose ABC transporter ribose-binding protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NS53_9RHIZ
Ribose ABC transporter ribose-binding protein {ECO:0000313|EMBL:EKF42140.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
sugar ABC transporter substrate-binding protein
Displaying items 1-30 of 52 in total

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