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SCNpilot_expt_1000_bf_scaffold_2604_curated

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2604_curated_1
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..260
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003713B45
Uncharacterized protein {ECO:0000313|EMBL:EJN06119.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
DGPF protein
SCNpilot_expt_1000_bf_scaffold_2604_curated_2
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

257..1534
DNA (1278bp) protein (426aa)
ECF subfamily RNA polymerase sigma-70 factor n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HPP5_9RHIZ
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:CDX32514.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
ECF subfamily RNA polymerase sigma-70 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily rbh
SCNpilot_expt_1000_bf_scaffold_2604_curated_3
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1605..2081
DNA (477bp) protein (159aa)
Activator of Hsp90 ATPase-like protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11JA3_MESSB
activator of Hsp90 ATPase-like protein
Activator of Hsp90 ATPase-like protein {ECO:0000313|EMBL:ABG62522.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_2604_curated_4
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2091..2840)
DNA (750bp) protein (250aa)
3-ketoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:EHK54413.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EHK54413.1};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
fabG; 3-ketoacyl-ACP reductase (EC:1.1.1.100); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] rbh
3-ketoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HXT7_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2604_curated_5
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2866..4020)
DNA (1155bp) protein (385aa)
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
Aldehyde dehydrogenase n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C843_9RHIZ
Aldehyde dehydrogenase {ECO:0000313|EMBL:EIM77995.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
SCNpilot_expt_1000_bf_scaffold_2604_curated_6
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4095..4325)
DNA (231bp) protein (77aa)
Aadehyde dehydrogenase 2B4 (Fragment) n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HXT5_9RHIZ
Aadehyde dehydrogenase 2B4 {ECO:0000313|EMBL:EHK54460.1}; Flags: Fragment;; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_expt_1000_bf_scaffold_2604_curated_7
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4535..5260)
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NAE3_RHISP
Uncharacterized protein {ECO:0000313|EMBL:CCF17988.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2604_curated_8
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5489..6010
DNA (522bp) protein (174aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
glucose-6-phosphate 1-dehydrogenase; K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49]
Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MT94_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2604_curated_9
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6014..6712
DNA (699bp) protein (233aa)
6-phosphogluconolactonase; K01057 6-phosphogluconolactonase [EC:3.1.1.31]
6-phosphogluconolactonase {ECO:0000313|EMBL:ABG61563.1}; EC=3.1.1.31 {ECO:0000313|EMBL:ABG61563.1};; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
6-phosphogluconolactonase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11M12_MESSB
SCNpilot_expt_1000_bf_scaffold_2604_curated_10
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6726..8540
DNA (1815bp) protein (605aa)
6-phosphogluconate dehydratase (EC:4.2.1.12); K01690 phosphogluconate dehydratase [EC:4.2.1.12]
UPI0003CE3A38 related cluster n=1 Tax=unknown RepID=UPI0003CE3A38
Phosphogluconate dehydratase {ECO:0000313|EMBL:EXL03200.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
SCNpilot_expt_1000_bf_scaffold_2604_curated_11
unknown

Not on your lists

comp(8918..9286)
DNA (369bp) protein (123aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2604_curated_12
unknown

Not on your lists

comp(9503..10036)
DNA (534bp) protein (178aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2604_curated_13
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10258..10680)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZQV0_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM88575.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_expt_1000_bf_scaffold_2604_curated_14
Hyphomonas chukchiensis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10802..12565)
DNA (1764bp) protein (588aa)
von Willebrand factor type A domain protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R5Z2_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KCZ58878.1}; TaxID=1280947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas chukchiensis.;"
von Willebrand factor A; K07114 uncharacterized protein
SCNpilot_expt_1000_bf_scaffold_2604_curated_15
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

comp(12593..13333)
DNA (741bp) protein (247aa)
Putative uncharacterized protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AJ85_RHIET
Uncharacterized protein {ECO:0000313|EMBL:KIY14983.1}; Flags: Fragment;; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
SCNpilot_expt_1000_bf_scaffold_2604_curated_16
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13580..14215
DNA (636bp) protein (212aa)
cytochrome bd ubiquinol oxidase, subunit I; K00425 cytochrome d ubiquinol oxidase subunit I [EC:1.10.3.-]
Cytochrome bd quinol oxidase subunit 1 apoprotein {ECO:0000313|EMBL:ABG65433.1}; EC=1.10.3.- {ECO:0000313|EMBL:ABG65433.1};; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
Cytochrome bd quinol oxidase subunit 1 apoprotein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11AZ2_MESSB
SCNpilot_expt_1000_bf_scaffold_2604_curated_17
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14220..15224
DNA (1005bp) protein (335aa)
cytochrome d ubiquinol oxidase, subunit II; K00426 cytochrome d ubiquinol oxidase subunit II [EC:1.10.3.-]
Cytochrome bd quinol oxidase subunit 2 apoprotein {ECO:0000313|EMBL:ABG65432.1}; EC=1.10.3.- {ECO:0000313|EMBL:ABG65432.1};; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
Cytochrome bd quinol oxidase subunit 2 apoprotein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11AZ3_MESSB
SCNpilot_expt_1000_bf_scaffold_2604_curated_18
Thioclava sp. 13D2W-2, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15282..15761)
DNA (480bp) protein (160aa)
DoxX n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11E83_MESSB
Uncharacterized protein {ECO:0000313|EMBL:KFE33806.1}; TaxID=1317124 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. 13D2W-2.;"
DoxX protein
SCNpilot_expt_1000_bf_scaffold_2604_curated_19
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15868..16830)
DNA (963bp) protein (321aa)
Transcriptional regulator, AraC family n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EX78_9RHIZ
Transcriptional regulator, AraC family {ECO:0000313|EMBL:CCV08590.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_2604_curated_20
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16968..18173
DNA (1206bp) protein (402aa)
acetyl-CoA acetyltransferase (EC:2.3.1.16); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:ABQ69982.1}; EC=2.3.1.16 {ECO:0000313|EMBL:ABQ69982.1};; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000370EC5D
SCNpilot_expt_1000_bf_scaffold_2604_curated_21
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18197..18955)
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003688410
TetR family transcriptional regulator
Putative TetR family transcriptional regulator {ECO:0000313|EMBL:BAH51679.1}; TaxID=632772 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus (strain B4).;"
SCNpilot_expt_1000_bf_scaffold_2604_curated_22
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19101..19673)
DNA (573bp) protein (191aa)
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:EWC63802.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EWC63802.1};; TaxID=909613 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;"
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036AA7D8
N-acylmannosamine 1-dehydrogenase, putative
SCNpilot_expt_1000_bf_scaffold_2604_curated_23
Mycobacterium tuberculosis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20062..20322)
DNA (261bp) protein (87aa)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000313|EMBL:CRD51202.1}; EC=4.1.1.21 {ECO:0000313|EMBL:CRD51202.1};; TaxID=1773 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex.;" source="Mycobacterium tuberculosis.;"
Uncharacterized protein n=1 Tax=Mycobacterium tuberculosis RGTB423 RepID=H8I1F8_MYCTU
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2604_curated_24
Burkholderia sp. USM B20, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21352..21657
DNA (306bp) protein (102aa)
enoyl-CoA hydratase; K01692 enoyl-CoA hydratase [EC:4.2.1.17]
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003795C38
Enoyl-CoA hydratase {ECO:0000313|EMBL:KJE53877.1}; TaxID=1571773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. USM B20.;"
Displaying 24 items

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