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SCNpilot_expt_1000_bf_scaffold_4282_curated

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4282_curated_1
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..480
DNA (480bp) protein (160aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
pyrG; CTP synthetase; K01937 CTP synthase [EC:6.3.4.2]
CTP synthetase n=1 Tax=Hoeflea sp. 108 RepID=UPI00036118A4
SCNpilot_expt_1000_bf_scaffold_4282_curated_2
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(477..776)
DNA (300bp) protein (100aa)
Plasmid stabilization system protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NTJ8_AZOS1
Plasmid stabilization protein {ECO:0000313|EMBL:KGD92011.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
plasmid stabilization system protein
SCNpilot_expt_1000_bf_scaffold_4282_curated_3
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(773..1024)
DNA (252bp) protein (84aa)
Putative addiction module antidote protein,CopG/Arc/MetJ family n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0Q5S3_9RHIZ
Addiction module antitoxin {ECO:0000313|EMBL:KGD92010.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
addiction module antidote protein; K07746 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4282_curated_4
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1083..1799)
DNA (717bp) protein (239aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
methionine sulfoxide reductase A (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
methionine sulfoxide reductase A n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI0003707A21
SCNpilot_expt_1000_bf_scaffold_4282_curated_5
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1910..3880)
DNA (1971bp) protein (657aa)
Acetyl-CoA carboxylase biotin carboxylase subunit {ECO:0000313|EMBL:EHH12778.1}; EC=6.4.1.2 {ECO:0000313|EMBL:EHH12778.1};; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
acetyl-CoA carboxylase biotin carboxylase subunit (EC:6.4.1.2); K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] rbh
PREDICTED: biotin carboxylase 1, chloroplastic-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C12B88
SCNpilot_expt_1000_bf_scaffold_4282_curated_6
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3889..4101)
DNA (213bp) protein (71aa)
Acetyl-CoA carboxylase biotin carboxyl carrier protein subunit n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C1C7_9RHIZ
Acetyl-CoA carboxylase biotin carboxyl carrier protein subunit {ECO:0000313|EMBL:EIM75629.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
acetyl-CoA carboxylase, biotin carboxyl carrier protein; K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein
SCNpilot_expt_1000_bf_scaffold_4282_curated_7
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4464..4901)
DNA (438bp) protein (146aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
3-dehydroquinate dehydratase, type II (EC:4.2.1.10); K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10]
3-dehydroquinate dehydratase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FAH9_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4282_curated_8
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5044..5856)
DNA (813bp) protein (271aa)
UPI0003CEA662 related cluster n=1 Tax=unknown RepID=UPI0003CEA662
DSBA oxidoreductase {ECO:0000313|EMBL:ESW92876.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
DSBA oxidoreductase
SCNpilot_expt_1000_bf_scaffold_4282_curated_9
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5938..7341)
DNA (1404bp) protein (468aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035CE576
Peptidase M48, Ste24p {ECO:0000313|EMBL:EKF42702.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_4282_curated_10
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7480..8628
DNA (1149bp) protein (383aa)
1-aminocyclopropane-1-carboxylate deaminase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FRF3_9RHIZ
1-aminocyclopropane-1-carboxylate deaminase {ECO:0000313|EMBL:ESX82127.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
class I and II aminotransferase
SCNpilot_expt_1000_bf_scaffold_4282_curated_11
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8639..9472
DNA (834bp) protein (278aa)
sugar phosphate isomerase n=1 Tax=Rhizobium leguminosarum RepID=UPI0003638916
Sugar phosphate isomerase {ECO:0000313|EMBL:KKB12463.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4282_curated_12
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10571..11716
DNA (1146bp) protein (382aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QN20_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP07439.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4282_curated_13
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11765..12160
DNA (396bp) protein (132aa)
Ribonuclease E n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DFY8_BRAJP
ribonuclease E
Ribonuclease E {ECO:0000313|EMBL:BAL10762.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_expt_1000_bf_scaffold_4282_curated_14
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12896..14164
DNA (1269bp) protein (423aa)
cell wall hydrolase/autolysin; K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HW92_9RHIZ
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:EHK54935.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_expt_1000_bf_scaffold_4282_curated_15
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14370..16772
DNA (2403bp) protein (801aa)
UPI0003CEB45E related cluster n=1 Tax=unknown RepID=UPI0003CEB45E
Penicillin-binding protein 1A {ECO:0000313|EMBL:ESW77426.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
penicillin-binding protein, 1A family
SCNpilot_expt_1000_bf_scaffold_4282_curated_16
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16766..17524)
DNA (759bp) protein (253aa)
ABC transporter permease n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C582_9RHIZ
ABC transporter permease {ECO:0000313|EMBL:EIM76984.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
ABC-type dipeptide/oligopeptide/nickel transport systems, permease component
SCNpilot_expt_1000_bf_scaffold_4282_curated_17
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17536..18468)
DNA (933bp) protein (311aa)
Oligopeptide transport system permease oppB n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C583_9RHIZ
Oligopeptide transport system permease oppB {ECO:0000313|EMBL:EIM76985.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
ABC-type dipeptide/oligopeptide/nickel transport systems, permease component
SCNpilot_expt_1000_bf_scaffold_4282_curated_18
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18479..18907)
DNA (429bp) protein (143aa)
Oligopeptide-binding protein OppA n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U9W9_RHIRD
Oligopeptide-binding protein OppA {ECO:0000313|EMBL:EGP57115.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
ABC-type dipeptide/oligopeptide/nickel transport systems, substrate binding component
SCNpilot_expt_1000_bf_scaffold_4282_curated_19
unknown

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19503..19946
DNA (444bp) protein (148aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4282_curated_20
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19960..20784)
DNA (825bp) protein (275aa)
NADH dehydrogenase (ubiquinone) flavoprotein 2 (EC:1.6.99.3)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000360E5F3
Uncharacterized protein {ECO:0000313|EMBL:EIM76987.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
SCNpilot_expt_1000_bf_scaffold_4282_curated_21
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21370..22392
DNA (1023bp) protein (341aa)
peptide chain release factor 2 n=1 Tax=Rhizobium loti RepID=UPI00037D5DD1
peptide chain release factor 2; K02836 peptide chain release factor 2 rbh
Peptide chain release factor 2 {ECO:0000256|SAAS:SAAS00090452}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
SCNpilot_expt_1000_bf_scaffold_4282_curated_22
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22401..22877
DNA (477bp) protein (159aa)
ATPase n=1 Tax=Rhizobium gallicum RepID=UPI00037D6F98
activator of Hsp90 ATPase 1 family protein
Activator of Hsp90 ATPase 1 family protein {ECO:0000313|EMBL:ACI55116.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_1000_bf_scaffold_4282_curated_23
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22874..24142)
DNA (1269bp) protein (423aa)
Peptidase M23 n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HS73_9RHIZ
Peptidase M23 {ECO:0000313|EMBL:EHK56402.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
peptidase M23
SCNpilot_expt_1000_bf_scaffold_4282_curated_24
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24258..24746)
DNA (489bp) protein (163aa)
Bacterioferritin comigratory protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HS72_9RHIZ
Bacterioferritin comigratory protein {ECO:0000313|EMBL:EHK56401.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
bcp; bacterioferritin comigratory protein
SCNpilot_expt_1000_bf_scaffold_4282_curated_25
unknown

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comp(24956..25675)
DNA (720bp) protein (240aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4282_curated_26
unknown

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comp(25739..25945)
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4282_curated_27
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26699..28213
DNA (1515bp) protein (505aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YFK9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX11768.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4282_curated_28
unknown

Not on your lists

28213..28425
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4282_curated_29
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28426..29307)
DNA (882bp) protein (294aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00009759}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
tyrS; tyrosyl-tRNA synthetase (EC:6.1.1.1); K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1]
Tyrosine--tRNA ligase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EQZ6_9RHIZ
Displaying 29 items

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