ggKbase home page

SCNpilot_expt_1000_bf_scaffold_4612_curated

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4612_curated_1
R_Methylophilales_57_10, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..134)
DNA (132bp) protein (44aa)
Tax=RIFCSPHIGHO2_02_FULL_Methylophilales_57_10_curated
SCNpilot_expt_1000_bf_scaffold_4612_curated_2
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

334..1506
DNA (1173bp) protein (391aa)
nitrate reductase subunit beta; K00371 nitrate reductase 1, beta subunit [EC:1.7.99.4]
nitrate reductase A subunit beta n=1 Tax=Paracoccus sp. N5 RepID=UPI00037421BE
Nitrate reductase {ECO:0000313|EMBL:EZQ13516.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
SCNpilot_expt_1000_bf_scaffold_4612_curated_3
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1503..2189
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Paracoccus sp. N5 RepID=UPI00036EA45B
Nitrate reductase {ECO:0000313|EMBL:EXL03228.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
nitrate reductase molybdenum cofactor assembly chaperone; K00373 nitrate reductase 1, delta subunit
SCNpilot_expt_1000_bf_scaffold_4612_curated_4
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2203..2940
DNA (738bp) protein (246aa)
respiratory nitrate reductase subunit gamma; K00374 nitrate reductase 1, gamma subunit [EC:1.7.99.4]
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00037AF129
Nitrate reductase {ECO:0000313|EMBL:EZQ13514.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
SCNpilot_expt_1000_bf_scaffold_4612_curated_5
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2937..3773
DNA (837bp) protein (279aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
PpiC-type peptidyl-prolyl cis-trans isomerase; K03769 peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
hypothetical protein n=1 Tax=Paracoccus sp. N5 RepID=UPI000376CC2C
SCNpilot_expt_1000_bf_scaffold_4612_curated_6
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4674..5030
DNA (357bp) protein (119aa)
SH3 type 3 domain protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YG36_MESOW
SH3 domain-containing protein {ECO:0000313|EMBL:AKH99578.1}; Flags: Precursor;; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
SH3 type 3 domain-containing protein
SCNpilot_expt_1000_bf_scaffold_4612_curated_7
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5156..6454)
DNA (1299bp) protein (433aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HS80_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK56409.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_expt_1000_bf_scaffold_4612_curated_8
unknown

Not on your lists

6554..7321
DNA (768bp) protein (256aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4612_curated_9
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7657..9561
DNA (1905bp) protein (635aa)
Integral membrane sensor hybrid histidine kinase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MI94_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:BAQ16612.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
integral membrane sensor hybrid histidine kinase
SCNpilot_expt_1000_bf_scaffold_4612_curated_10
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9477..10100)
DNA (624bp) protein (208aa)
Putative two-component response regulator n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M4A5_9RHIZ
Putative two-component response regulator {ECO:0000313|EMBL:EKF16866.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
two-component response regulator
SCNpilot_expt_1000_bf_scaffold_4612_curated_11
BJP_IG2158_Rhodobacterales_64_37, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10283..11116
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J0X1_POLGS
hypothetical protein
Tax=BJP_IG2158_Rhodobacterales_64_37
SCNpilot_expt_1000_bf_scaffold_4612_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11211..11390)
DNA (180bp) protein (60aa)
UPI0003CF37F1 related cluster n=1 Tax=unknown RepID=UPI0003CF37F1
Transposase {ECO:0000313|EMBL:EYR78526.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative transposase
SCNpilot_expt_1000_bf_scaffold_4612_curated_13
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12101..12301
DNA (201bp) protein (67aa)
Transposase-like protein n=1 Tax=Sinorhizobium meliloti GR4 RepID=M4IFU3_RHIML
Transposase-like protein
Transposase {ECO:0000313|EMBL:KGE82914.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
SCNpilot_expt_1000_bf_scaffold_4612_curated_14
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12298..12594
DNA (297bp) protein (99aa)
Transposase n=1 Tax=Rhizobium sp. RepID=L0NMN0_RHISP
Transposase-like protein
Transposase {ECO:0000313|EMBL:KGE82914.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
SCNpilot_expt_1000_bf_scaffold_4612_curated_15
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12938..14332)
DNA (1395bp) protein (465aa)
integral membrane sensor signal transduction histidine kinase; K02484 two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A7P3_STAND
SCNpilot_expt_1000_bf_scaffold_4612_curated_16
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14329..14988)
DNA (660bp) protein (220aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A7P2_STAND
Response regulator {ECO:0000313|EMBL:AID31584.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator
SCNpilot_expt_1000_bf_scaffold_4612_curated_17
unknown

Not on your lists

15600..15788
DNA (189bp) protein (63aa)

This feature has no annotations

Displaying 17 items

View Taxonomy