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SCNpilot_expt_1000_bf_scaffold_1437_curated

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1437_curated_1
Erythrobacter sp. SD-21, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..408)
DNA (408bp) protein (136aa)
cytochrome c oxidase subunit III; K02276 cytochrome c oxidase subunit III [EC:1.9.3.1]
Cytochrome c oxidase, subunit III n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PBQ6_9SPHN
Cytochrome c oxidase, subunit III {ECO:0000313|EMBL:EDL49004.1}; TaxID=161528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. SD-21.;"
SCNpilot_expt_1000_bf_scaffold_1437_curated_2
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(503..1060)
DNA (558bp) protein (186aa)
Cytochrome c oxidase assembly protein CtaG n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHN1_9SPHN
Cytochrome c oxidase assembly protein CtaG {ECO:0000256|HAMAP-Rule:MF_00155}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
cytochrome C oxidase assembly protein; K02258 cytochrome c oxidase assembly protein subunit 11
SCNpilot_expt_1000_bf_scaffold_1437_curated_3
unknown

Not on your lists

comp(1062..1193)
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1437_curated_4
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1190..1624)
DNA (435bp) protein (145aa)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:0000256|HAMAP-Rule:MF_00154}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
protoheme IX farnesyltransferase (EC:2.5.1.-); K02301 protoheme IX farnesyltransferase [EC:2.5.1.-]
Protoheme IX farnesyltransferase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IHI4_9SPHN
SCNpilot_expt_1000_bf_scaffold_1437_curated_5
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2223..3893)
DNA (1671bp) protein (557aa)
Cytochrome c oxidase subunit 1 {ECO:0000313|EMBL:AKH42327.1}; EC=1.9.3.1 {ECO:0000313|EMBL:AKH42327.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
cytochrome-c oxidase (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
cytochrome C oxidase subunit I n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225DFD0
SCNpilot_expt_1000_bf_scaffold_1437_curated_6
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3929..4795)
DNA (867bp) protein (289aa)
Cytochrome c oxidase subunit 2; EC=1.9.3.1;; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
cytochrome c oxidase, subunit II; K02275 cytochrome c oxidase subunit II [EC:1.9.3.1]
Cytochrome c oxidase subunit 2 n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MCI1_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1437_curated_7
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5140..5661
DNA (522bp) protein (174aa)
Invasion associated locus B family protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YBY2_MESOW
Invasion associated locus B family protein
Invasion associated locus B family protein {ECO:0000313|EMBL:AEH90024.1}; Flags: Precursor;; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_1437_curated_8
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5749..6213
DNA (465bp) protein (155aa)
UPI0003CEFCBA related cluster n=2 Tax=unknown RepID=UPI0003CEFCBA
Uncharacterized protein {ECO:0000313|EMBL:CDX42079.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1437_curated_9
unknown

Not on your lists

comp(6228..6383)
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1437_curated_10
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6482..7897
DNA (1416bp) protein (472aa)
Microcin-processing peptidase 2 n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BTI5_9RHIZ
Microcin-processing peptidase 2 {ECO:0000313|EMBL:EIM72887.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
peptidase U62 modulator of DNA gyrase; K03568 TldD protein
SCNpilot_expt_1000_bf_scaffold_1437_curated_11
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7912..8418)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3BA69_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EXL10175.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1437_curated_12
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8411..8776)
DNA (366bp) protein (122aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HZY1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX46031.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1437_curated_13
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8920..10161)
DNA (1242bp) protein (414aa)
(uracil-5)-methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
(Uracil-5)-methyltransferase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HZX4_9RHIZ
RNA methyltransferase {ECO:0000313|EMBL:EZQ16953.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
SCNpilot_expt_1000_bf_scaffold_1437_curated_14
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10158..10910)
DNA (753bp) protein (251aa)
hemolysin-like protein; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] rbh
Hemolysin-like protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q985Y0_RHILO
Hemolysin {ECO:0000313|EMBL:KGF67711.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
SCNpilot_expt_1000_bf_scaffold_1437_curated_15
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10954..11172)
DNA (219bp) protein (73aa)
Mlr7475 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q985Y2_RHILO
Uncharacterized protein {ECO:0000313|EMBL:ETA71914.1}; Flags: Precursor;; TaxID=935547 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium loti R7A.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1437_curated_16
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11310..13223)
DNA (1914bp) protein (638aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
deoxyxylulose-5-phosphate synthase; K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
UPI0003CE988B related cluster n=1 Tax=unknown RepID=UPI0003CE988B
SCNpilot_expt_1000_bf_scaffold_1437_curated_17
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13316..14236)
DNA (921bp) protein (307aa)
UPI0003CFA501 related cluster n=1 Tax=unknown RepID=UPI0003CFA501
Pirin-like protein CC_3178 {ECO:0000313|EMBL:CDX42106.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
Pirin domain-containing protein; K06911
SCNpilot_expt_1000_bf_scaffold_1437_curated_18
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14253..14549)
DNA (297bp) protein (99aa)
PIN domain-containing protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HWC1_9RHIZ
PIN domain protein {ECO:0000313|EMBL:CDQ09347.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
PIN domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1437_curated_19
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14648..14905)
DNA (258bp) protein (86aa)
Prevent host death protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HWC2_9RHIZ
Prevent host death protein {ECO:0000313|EMBL:EHK54965.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
prevent-host-death family protein
SCNpilot_expt_1000_bf_scaffold_1437_curated_20
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14973..15233)
DNA (261bp) protein (87aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
exodeoxyribonuclease VII small subunit; K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
exodeoxyribonuclease VII small subunit n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002ED8B16
SCNpilot_expt_1000_bf_scaffold_1437_curated_21
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15236..16159)
DNA (924bp) protein (308aa)
UPI0003CF12A3 related cluster n=1 Tax=unknown RepID=UPI0003CF12A3
Acetoin utilization protein {ECO:0000313|EMBL:ESY85028.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
deacetylase, histone deacetylase/acetoin utilization protein
SCNpilot_expt_1000_bf_scaffold_1437_curated_22
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16234..17259)
DNA (1026bp) protein (342aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MR81_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF19887.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1437_curated_23
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17303..17701)
DNA (399bp) protein (133aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00180, ECO:0000256|SAAS:SAAS00038056}; Short=DHBP synthase {ECO:0000256|HAMAP-Rule:MF_00180};; EC=4.1.99.12 {ECO:0000256|HAMAP-Rule:MF_00180, ECO:0000256|SAAS:SAAS00037921};; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
3,4-dihydroxy-2-butanone 4-phosphate synthase; K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BTJ4_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1437_curated_24

Not on your lists

18010..18384
DNA (375bp) protein (125aa)
Uncharacterized protein id=4041873 bin=GWA2_Methylomirabilis_73_35 species=Fibrisoma limi genus=Fibrisoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Uncharacterized protein {ECO:0000313|EMBL:EKD48231.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_1000_bf_scaffold_1437_curated_25
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18470..19600)
DNA (1131bp) protein (377aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5] rbh
Chorismate synthase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HZV7_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1437_curated_26
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19847..20092
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D8CDDF
Uncharacterized protein {ECO:0000313|EMBL:EIM72898.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1437_curated_27
Mesorhizobium sp. LNJC394B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20118..20711)
DNA (594bp) protein (198aa)
phosphoglycerate mutase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1]
Phosphoglycerate mutase n=1 Tax=Mesorhizobium sp. LNJC394B00 RepID=V7G7Y4_9RHIZ
Phosphoglycerate mutase {ECO:0000313|EMBL:ESY25033.1}; TaxID=1287274 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC394B00.;"
SCNpilot_expt_1000_bf_scaffold_1437_curated_28
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20821..21645)
DNA (825bp) protein (275aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
enoyl-(acyl carrier protein) reductase; K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9]
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Nitratireductor indicus C115 RepID=K2NU37_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1437_curated_29
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21746..22693)
DNA (948bp) protein (316aa)
Molecular chaperone DnaJ n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FTY9_9RHIZ
Molecular chaperone DnaJ {ECO:0000313|EMBL:ESX83167.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
heat shock protein DnaJ domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1437_curated_30
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22790..23188)
DNA (399bp) protein (133aa)
UPI0003CFA324 related cluster n=1 Tax=unknown RepID=UPI0003CFA324
Uncharacterized protein {ECO:0000313|EMBL:ESZ19440.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein
Displaying items 1-30 of 40 in total

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