ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1920_curated

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1920_curated_1
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..378)
DNA (378bp) protein (126aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y8W7_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHH11839.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
major facilitator superfamily protein
SCNpilot_expt_1000_bf_scaffold_1920_curated_2
unknown

Not on your lists

468..1037
DNA (570bp) protein (190aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1920_curated_3
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1633..2118)
DNA (486bp) protein (162aa)
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (st
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Rhizobium loti RepID=UPI00037B7C9C
SCNpilot_expt_1000_bf_scaffold_1920_curated_4
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2323..2778
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI000308A786
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAP43352.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_1000_bf_scaffold_1920_curated_5
Mesorhizobium sp. L103C119B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2775..3389)
DNA (615bp) protein (205aa)
UPI0003D06E62 related cluster n=1 Tax=unknown RepID=UPI0003D06E62
Riboflavin synthase subunit alpha {ECO:0000313|EMBL:ESZ69716.1}; TaxID=1287085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C119B0.;"
riboflavin synthase, alpha subunit
SCNpilot_expt_1000_bf_scaffold_1920_curated_6
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3389..4387)
DNA (999bp) protein (333aa)
5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase; K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Riboflavin biosynthesis protein RibD n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C277_9RHIZ
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
SCNpilot_expt_1000_bf_scaffold_1920_curated_7
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4468..4932)
DNA (465bp) protein (155aa)
Transcriptional repressor NrdR n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y164_MESOW
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ATP-cone domain-containing protein; K07738 transcriptional repressor NrdR
SCNpilot_expt_1000_bf_scaffold_1920_curated_8
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4936..5337)
DNA (402bp) protein (134aa)
Nucleic acid-binding protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I396_9RHIZ
Nucleic acid-binding protein {ECO:0000313|EMBL:EHK52558.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein; K07062
SCNpilot_expt_1000_bf_scaffold_1920_curated_9
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5334..5567)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UZ63_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN84112.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
AbrB/SpoV domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1920_curated_10
Mesorhizobium sp. LNJC394B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5652..6965)
DNA (1314bp) protein (438aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1287274 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC394B00.;"
PREDICTED: serine hydroxymethyltransferase, mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C10E48
glycine/serine hydroxymethyltransferase
SCNpilot_expt_1000_bf_scaffold_1920_curated_11
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7253..8845
DNA (1593bp) protein (531aa)
Dipeptide transporter periplasmic-binding component of ABC superfamily n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EGB4_9RHIZ
Dipeptide transporter periplasmic-binding component of ABC superfamily {ECO:0000313|EMBL:CCV03367.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
ABC-type dipeptide transport system, periplasmic component
SCNpilot_expt_1000_bf_scaffold_1920_curated_12
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8909..9916
DNA (1008bp) protein (336aa)
Peptide ABC transporter permease n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FQI5_9RHIZ
Peptide ABC transporter permease {ECO:0000313|EMBL:ESW85588.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
ABC transporter permease; K02033 peptide/nickel transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_1920_curated_13
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9918..10835
DNA (918bp) protein (306aa)
UPI0003CDF041 related cluster n=1 Tax=unknown RepID=UPI0003CDF041
Peptide ABC transporter {ECO:0000313|EMBL:ESW85589.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
binding-protein-dependent transport systems inner membrane component; K12370 dipeptide transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1920_curated_14
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10838..11692
DNA (855bp) protein (285aa)
ABC transporter ATP-binding component n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I3Q2_9RHIZ
ABC transporter ATP-binding component {ECO:0000313|EMBL:EHK52390.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
dppd1; ABC-type dipeptide/oligopeptide/nickel transport system; ATPase component; K12371 dipeptide transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1920_curated_15
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11698..12540
DNA (843bp) protein (281aa)
ABC transporter ATP-binding protein n=2 Tax=Mesorhizobium RepID=V7F8M0_9RHIZ
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:EXL09259.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
ABC transporter; K12372 dipeptide transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1920_curated_16
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12547..12792)
DNA (246bp) protein (82aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HSI3_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK56302.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
twin-arginine translocation pathway signal
SCNpilot_expt_1000_bf_scaffold_1920_curated_17
unknown

Not on your lists

12999..13331
DNA (333bp) protein (111aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1920_curated_18
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14111..14629)
DNA (519bp) protein (173aa)
MarR family transcriptional regulator n=1 Tax=Hoeflea sp. 108 RepID=UPI000367F492
MarR family transcriptional regulator {ECO:0000313|EMBL:EHH11852.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1920_curated_19
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14822..15250)
DNA (429bp) protein (143aa)
UPI0003D0283A related cluster n=1 Tax=unknown RepID=UPI0003D0283A
Uncharacterized protein {ECO:0000313|EMBL:CDX11174.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1920_curated_20
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15247..16296)
DNA (1050bp) protein (350aa)
3-hydroxyisobutyryl-CoA hydrolase, mitochondrial {ECO:0000313|EMBL:CDX17040.1}; EC=3.1.2.4 {ECO:0000313|EMBL:CDX17040.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030F9E75
enoyl-CoA hydratase/isomerase
SCNpilot_expt_1000_bf_scaffold_1920_curated_21
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16442..17473
DNA (1032bp) protein (344aa)
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
Porphobilinogen synthase (EC:4.2.1.24); K01698 porphobilinogen synthase [EC:4.2.1.24]
UPI0003CE811E related cluster n=1 Tax=unknown RepID=UPI0003CE811E
SCNpilot_expt_1000_bf_scaffold_1920_curated_22
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17477..17839
DNA (363bp) protein (121aa)
PREDICTED: transmembrane protein 256-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1A4D7
Uncharacterized protein {ECO:0000313|EMBL:CDX11162.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1920_curated_23

Not on your lists

comp(17853..18698)
DNA (846bp) protein (282aa)
Permease of the drug/metabolite transporter (DMT) superfamily n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4R2B8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKN74038.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
membrane protein; dmt domain
SCNpilot_expt_1000_bf_scaffold_1920_curated_24
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18885..19463
DNA (579bp) protein (193aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HSH1_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK56381.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1920_curated_25
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19604..20308
DNA (705bp) protein (235aa)
Two component transcriptional regulator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HSH0_9RHIZ
Two component transcriptional regulator {ECO:0000313|EMBL:EHK56380.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
putative two component transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1920_curated_26
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20312..21574
DNA (1263bp) protein (421aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
baeS; signal transduction histidine-protein kinase BaeS (EC:2.7.13.3)
Sensor protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HSG9_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1920_curated_27
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21582..22526)
DNA (945bp) protein (315aa)
glycerophosphoryl diester phosphodiesterase; K01126 glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
Glycerophosphoryl diester phosphodiesterase n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BTS2_9RHIZ
Glycerophosphodiester phosphodiesterase {ECO:0000313|EMBL:KFL30905.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCNpilot_expt_1000_bf_scaffold_1920_curated_28
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22643..24034)
DNA (1392bp) protein (464aa)
Pyridine nucleotide transhydrogenase, soluble {ECO:0000313|EMBL:CCV13179.1}; EC=1.6.1.1 {ECO:0000313|EMBL:CCV13179.1};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K00322 NAD(P) transhydrogenase [EC:1.6.1.1]
Pyridine nucleotide transhydrogenase, soluble n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FKR4_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1920_curated_29
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24205..24675
DNA (471bp) protein (157aa)
membrane protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003796DAA
RDD domain-containing protein
RDD domain containing protein {ECO:0000313|EMBL:ADV13613.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_1920_curated_30
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24810..25565
DNA (756bp) protein (252aa)
Putative arginyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194293}; Short=Arginyltransferase {ECO:0000256|HAMAP-Rule:MF_00689};; Short=R-transferase {ECO:0000256|HAMAP-Rule:MF_00689};; EC=2.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194290};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
arginyl-tRNA-protein transferase (EC:2.3.2.8); K00685 arginine-tRNA-protein transferase [EC:2.3.2.8] rbh
arginyl-tRNA-protein transferase n=1 Tax=Hoeflea sp. 108 RepID=UPI00036E4632
Displaying items 1-30 of 56 in total

View Taxonomy