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SCNpilot_expt_1000_bf_scaffold_2184_curated

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2184_curated_1
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1..717
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036C2DEB
Binding-protein-dependent transport system inner membrane component {ECO:0000313|EMBL:EEP69739.1}; TaxID=219305 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. ATCC 39149.;"
ABC transporter permease
SCNpilot_expt_1000_bf_scaffold_2184_curated_2
Halothermothrix orenii, Halothermothrix, Halanaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

717..1508
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037F9685
binding-protein-dependent transport system inner membrane protein; K02026 multiple sugar transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACL70806.1}; TaxID=373903 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halanaerobiaceae; Halothermothrix.;" source="Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562).;"
SCNpilot_expt_1000_bf_scaffold_2184_curated_3
unknown

Not on your lists

1512..1916
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036995A4
SCNpilot_expt_1000_bf_scaffold_2184_curated_4
Lyngbya confervoides, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

1930..2988
DNA (1059bp) protein (353aa)
2-hydroxyacid dehydrogenase n=1 Tax=Rhizobium meliloti RepID=UPI00037A1087
oxidoreductase
Uncharacterized protein {ECO:0000313|EMBL:KIF44409.1}; Flags: Fragment;; TaxID=1574623 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya confervoides BDU141951.;"
SCNpilot_expt_1000_bf_scaffold_2184_curated_5
unknown

Not on your lists

comp(2924..3679)
DNA (756bp) protein (252aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2184_curated_6
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

3991..5175
DNA (1185bp) protein (395aa)
Putative oxidoreductase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I5X0_CALAS
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:BAM00658.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
SCNpilot_expt_1000_bf_scaffold_2184_curated_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5187..5858
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0UVA0_RHILV
Uncharacterized protein {ECO:0000313|EMBL:EJC64593.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
csgA; C-factor protein
SCNpilot_expt_1000_bf_scaffold_2184_curated_8
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5852..6202
DNA (351bp) protein (117aa)
SMP30/CGR1 family protein n=1 Tax=Acanthamoeba castellanii str. Neff RepID=L8HF24_ACACA
Gluconolactonase {ECO:0000313|EMBL:KJB94196.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
SMP30/CGR1 family protein
SCNpilot_expt_1000_bf_scaffold_2184_curated_9
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6256..6717
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Microbulbifer variabilis RepID=UPI000373C5BF
IclR family transcriptional regulator {ECO:0000313|EMBL:KGD88064.1}; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
IclR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2184_curated_10
Prauserella sp. Am3, Prauserella, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6748..7914)
DNA (1167bp) protein (389aa)
L-alanine-DL-glutamate epimerase-like protein {ECO:0000313|EMBL:KID31482.1}; EC=4.2.1.6 {ECO:0000313|EMBL:KID31482.1};; TaxID=1515610 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Prauserella.;" source="Prauserella sp. Am3.;"
mandelate racemase/muconate lactonizing protein; K01684 galactonate dehydratase [EC:4.2.1.6]
hypothetical protein n=1 Tax=Sciscionella marina RepID=UPI00035FFB9E
SCNpilot_expt_1000_bf_scaffold_2184_curated_11
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7945..9042)
DNA (1098bp) protein (366aa)
Carbohydrate ABC transporter ATP-binding protein, CUT1 family n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SJ69_THEM7
sugar ABC transporter ATP-binding protein; K10112 maltose/maltodextrin transport system ATP-binding protein
Carbohydrate ABC transporter ATP-binding protein, CUT1 family {ECO:0000313|EMBL:ADU52093.1}; TaxID=644966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM; 10246 / 7p75a).;"
SCNpilot_expt_1000_bf_scaffold_2184_curated_12
Prauserella sp. Am3, Prauserella, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9039..9890)
DNA (852bp) protein (284aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E9M4_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KID31484.1}; TaxID=1515610 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Prauserella.;" source="Prauserella sp. Am3.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2184_curated_13
Peptococcaceae bacterium BRH_c23, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9883..10749)
DNA (867bp) protein (289aa)
Binding-protein-dependent transport systems inner membrane component n=2 Tax=Desulfitobacterium hafniense RepID=B8FVE9_DESHD
ABC transporter permease {ECO:0000313|EMBL:KJS49004.1}; TaxID=1629714 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c23.;"
binding-protein-dependent transporters inner membrane component; K02026 multiple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2184_curated_14
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10746..11348)
DNA (603bp) protein (201aa)
ABC transporter, permease protein n=2 Tax=Desulfitobacterium hafniense RepID=G9XUD8_DESHA
hypothetical protein; K02025 multiple sugar transport system permease protein
ABC transporter, permease protein {ECO:0000313|EMBL:EHL04736.1}; TaxID=537010 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium hafniense DP7.;"
SCNpilot_expt_1000_bf_scaffold_2184_curated_15
Peptococcaceae bacterium BRH_c23, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11348..12955)
DNA (1608bp) protein (536aa)
Extracellular solute-binding protein family 1 n=1 Tax=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) RepID=B8FVE4_DESHD
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJS48999.1}; TaxID=1629714 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c23.;"
hypothetical protein; K02027 multiple sugar transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2184_curated_16
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13126..13890
DNA (765bp) protein (255aa)
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase n=1 Tax=Nitratireductor indicus C115 RepID=K2PND7_9RHIZ
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase {ECO:0000313|EMBL:EKF42577.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hpcH; HpcH/HpaI aldolase
SCNpilot_expt_1000_bf_scaffold_2184_curated_17
Pseudomonas sp. GM60, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13892..14782
DNA (891bp) protein (297aa)
Gluconolactonase n=1 Tax=Pseudomonas sp. GM60 RepID=J2U3J9_9PSED
Gluconolactonase {ECO:0000313|EMBL:EJM86961.1}; TaxID=1144334 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM60.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2184_curated_18
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14861..15871
DNA (1011bp) protein (337aa)
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
galM; aldose 1-epimerase protein; K01785 aldose 1-epimerase [EC:5.1.3.3]
aldose 1-epimerase n=1 Tax=Rhizobium mongolense RepID=UPI0003B46BA2
SCNpilot_expt_1000_bf_scaffold_2184_curated_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15998..16477
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F9412E
Putative endoribonuclease L-PSP {ECO:0000313|EMBL:KFC64160.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
endoribonuclease L-PSP
SCNpilot_expt_1000_bf_scaffold_2184_curated_20
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17083..17364
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI000380873A
aldose 1-epimerase
Aldose 1-epimerase {ECO:0000313|EMBL:ACK50828.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_expt_1000_bf_scaffold_2184_curated_21
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17398..18621
DNA (1224bp) protein (408aa)
dihydroorotase; K01465 dihydroorotase [EC:3.5.2.3]
Dihydroorotase n=2 Tax=Ketogulonicigenium vulgare RepID=E3EXW4_KETVY
Dihydroorotase {ECO:0000313|EMBL:KKB83711.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_expt_1000_bf_scaffold_2184_curated_22
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18618..19706
DNA (1089bp) protein (363aa)
Alanine racemase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4QXP8_9RHIZ
Alanine racemase {ECO:0000313|EMBL:ESR24507.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
alanine racemase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_2184_curated_23
Rubinisphaera brasiliensis, Rubinisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

19759..20784
DNA (1026bp) protein (342aa)
oxidoreductase; K00010 myo-inositol 2-dehydrogenase [EC:1.1.1.18]
Oxidoreductase domain protein n=1 Tax=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) RepID=F0SJY8_PLABD
Oxidoreductase domain protein {ECO:0000313|EMBL:ADY58677.1}; TaxID=756272 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rubinisphaera.;" source="Rubinisphaera brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /; NBRC 103401 / IFAM 1448) (Planctomyces brasiliensis).;"
SCNpilot_expt_1000_bf_scaffold_2184_curated_24
Candidatus Pelagibacter ubique, Candidatus Pelagibacter, Pelagibacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20809..21708
DNA (900bp) protein (300aa)
UPI0003C7E63B related cluster n=1 Tax=unknown RepID=UPI0003C7E63B
Hypothetical transport protein yyaM {ECO:0000313|EMBL:EAS84464.1}; TaxID=314261 species="Bacteria; Proteobacteria; Alphaproteobacteria; Pelagibacterales; Pelagibacteraceae; Candidatus Pelagibacter.;" source="Candidatus Pelagibacter ubique HTCC1002.;"
yyaM; transporter
SCNpilot_expt_1000_bf_scaffold_2184_curated_25
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21724..22275)
DNA (552bp) protein (184aa)
Mandelate racemase n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D9Y9_BRAJP
mandelate racemase
Mandelate racemase {ECO:0000313|EMBL:BAL12845.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_expt_1000_bf_scaffold_2184_curated_26
unknown

Not on your lists

22722..22961
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2184_curated_27
Streptomyces himastatinicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23031..23648
DNA (618bp) protein (206aa)
Putative transcriptional regulator, PadR family n=1 Tax=Streptomyces himastatinicus ATCC 53653 RepID=D9WKP3_9ACTO
Putative transcriptional regulator, PadR family {ECO:0000313|EMBL:EFL27733.1}; TaxID=457427 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces himastatinicus ATCC 53653.;"
Transcriptional regulator, PadR family
SCNpilot_expt_1000_bf_scaffold_2184_curated_28
Streptomyces fulvissimus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23844..25172
DNA (1329bp) protein (443aa)
Choline-sulfatase (EC:3.1.6.6)
Uncharacterized protein {ECO:0000313|EMBL:AGK76312.1}; EC=3.1.6.6 {ECO:0000313|EMBL:AGK76312.1};; TaxID=1303692 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces fulvissimus DSM 40593.;"
Choline-sulfatase n=1 Tax=Streptomyces fulvissimus DSM 40593 RepID=N0CTE4_9ACTO
SCNpilot_expt_1000_bf_scaffold_2184_curated_29
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25169..26473
DNA (1305bp) protein (435aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000369CC65
Uncharacterized protein {ECO:0000313|EMBL:EUB98221.1}; Flags: Precursor;; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2184_curated_30
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26533..27420
DNA (888bp) protein (296aa)
Permease component of ABC-type sugar transporter n=1 Tax=Microvirga sp. WSM3557 RepID=I4YQB5_9RHIZ
Sugar ABC transporter permease {ECO:0000313|EMBL:KFG69880.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
ABC transporter permease; K02025 multiple sugar transport system permease protein
Displaying items 1-30 of 53 in total

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