ggKbase home page

SCNpilot_expt_1000_bf_scaffold_9411_curated

Search features with annotation key words

Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9411_curated_1
Mesorhizobium sp. L103C105A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..809
DNA (807bp) protein (269aa)
UPI0003D00BBB related cluster n=1 Tax=unknown RepID=UPI0003D00BBB
Uncharacterized protein {ECO:0000313|EMBL:ESZ78477.1}; TaxID=1287074 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C105A0.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9411_curated_2
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1059..1775)
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Nevskia ramosa RepID=UPI0003B50B76
Uncharacterized protein {ECO:0000313|EMBL:ETR78958.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
transcriptional regulator, TetR family
SCNpilot_expt_1000_bf_scaffold_9411_curated_3
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1982..2788)
DNA (807bp) protein (269aa)
short chain enoyl-CoA hydratase (EC:4.2.1.17)
Short chain enoyl-CoA hydratase {ECO:0000313|EMBL:ABE30199.1}; EC=4.2.1.17 {ECO:0000313|EMBL:ABE30199.1};; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
Short chain enoyl-CoA hydratase n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q140P0_BURXL
SCNpilot_expt_1000_bf_scaffold_9411_curated_4
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2837..3571)
DNA (735bp) protein (245aa)
hypothetical protein; K01104 protein-tyrosine phosphatase [EC:3.1.3.48]
protein tyrosine phosphatase n=1 Tax=Nevskia ramosa RepID=UPI0003B6084C
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
SCNpilot_expt_1000_bf_scaffold_9411_curated_5
Pseudomonas syringae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3589..4398)
DNA (810bp) protein (270aa)
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA {ECO:0000256|HAMAP-Rule:MF_00905}; Short=3',5'-cyclic AMP phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_00905};; Short=cAMP phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_00905};; EC=3.1.4.17 {ECO:0000256|HAMAP-Rule:MF_00905};; TaxID=317 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas syringae.;"
metallophosphatase n=1 Tax=Pseudomonas tolaasii RepID=UPI000312E911
cAMP phosphodiesterase
SCNpilot_expt_1000_bf_scaffold_9411_curated_6
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4682..5944
DNA (1263bp) protein (421aa)
Extracellular solute-binding protein, family 1 n=1 Tax=Thermus sp. CCB_US3_UF1 RepID=G8N844_9DEIN
Uncharacterized protein {ECO:0000313|EMBL:KEJ95429.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
Extracellular solute-binding protein, family 1; K05813 sn-glycerol 3-phosphate transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_9411_curated_7
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5971..6282
DNA (312bp) protein (104aa)
Permease component of ABC-type sugar transporter n=1 Tax=Rhizobium sp. CF142 RepID=J1TGR6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KEJ95428.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
SN-glycerol-3-phosphate transport system permease protein UgpA; K02025 multiple sugar transport system permease protein
Displaying 7 items

View Taxonomy