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SCNpilot_expt_1000_bf_scaffold_5516_curated

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5516_curated_1
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..1038)
DNA (1038bp) protein (346aa)
Putative permease ABC transporter protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HKC0_9RHIZ
Putative permease ABC transporter protein {ECO:0000313|EMBL:EHK58840.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
putative permease ABC transporter protein; K05778 putative thiamine transport system permease protein
SCNpilot_expt_1000_bf_scaffold_5516_curated_2
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1260..2489)
DNA (1230bp) protein (410aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N7W3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF20133.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
ynjB; protein YnjB
SCNpilot_expt_1000_bf_scaffold_5516_curated_3
unknown

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comp(2645..2845)
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5516_curated_4
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2959..3444)
DNA (486bp) protein (162aa)
Ferroxidase {ECO:0000256|PIRNR:PIRNR002560}; EC=1.16.3.1 {ECO:0000256|PIRNR:PIRNR002560};; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
Bacterioferritin n=2 Tax=Rhizobium RepID=J2AQZ1_9RHIZ
bfr; bacterioferritin protein; K03594 bacterioferritin
SCNpilot_expt_1000_bf_scaffold_5516_curated_5
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3410..3721)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2PTQ0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF44462.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5516_curated_6
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3950..4234)
DNA (285bp) protein (95aa)
Hemin import ATP-binding protein HmuV {ECO:0000256|HAMAP-Rule:MF_01718, ECO:0000256|SAAS:SAAS00041307}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01718, ECO:0000256|SAAS:SAAS00041330};; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
hmuV; hemin importer ATP-binding subunit; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
Iron ABC transporter n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FJB0_9RHIZ
SCNpilot_expt_1000_bf_scaffold_5516_curated_7
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4707..5807)
DNA (1101bp) protein (367aa)
UPI0003CE2337 related cluster n=1 Tax=unknown RepID=UPI0003CE2337
Iron ABC transporter {ECO:0000313|EMBL:EXL09830.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
transport system permease; K02015 iron complex transport system permease protein
SCNpilot_expt_1000_bf_scaffold_5516_curated_8
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5812..6687)
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003662EE7
Hemin ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFL27102.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_5516_curated_9
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6868..7323
DNA (456bp) protein (152aa)
Putative uncharacterized protein n=1 Tax=Burkholderia pseudomallei (strain 1710b) RepID=Q3JHL8_BURP1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA51512.1}; TaxID=320372 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei (strain 1710b).;"
SCNpilot_expt_1000_bf_scaffold_5516_curated_10
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7959..10010
DNA (2052bp) protein (684aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036602B8
Uncharacterized protein {ECO:0000313|EMBL:KKB10688.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
TonB-dependent heme/hemoglobin receptor family protein; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_1000_bf_scaffold_5516_curated_11
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10010..10441
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FE62_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV14438.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5516_curated_12
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10554..11588
DNA (1035bp) protein (345aa)
TonB family protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HST0_9RHIZ
TonB family protein {ECO:0000313|EMBL:EHK56217.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5516_curated_13
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11752..12939
DNA (1188bp) protein (396aa)
pimeloyl-CoA dehydrogenase, large subunit; K00257 [EC:1.3.99.-]
Pimeloyl-CoA dehydrogenase, large subunit n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UFF1_METS4
Pimeloyl-CoA dehydrogenase, large subunit {ECO:0000313|EMBL:ACA14805.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_expt_1000_bf_scaffold_5516_curated_14
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12936..14072
DNA (1137bp) protein (379aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Burkholderia cenocepacia (strain MC0-3) RepID=B1KCK9_BURCC
CaiA protein {ECO:0000313|EMBL:BAQ48921.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
acyl-CoA dehydrogenase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_5516_curated_15
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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14290..15306
DNA (1017bp) protein (339aa)
NMT1/THI5 like family protein 3 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HND2_ACHXA
NMT1/THI5-like family protein 3; K02051 NitT/TauT family transport system substrate-binding protein
NMT1/THI5 like family protein 3 {ECO:0000313|EMBL:ADP15797.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
SCNpilot_expt_1000_bf_scaffold_5516_curated_16
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15303..16091
DNA (789bp) protein (263aa)
ABC transporter related n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IME8_METNO
ABC transporter-like protein; K02049 NitT/TauT family transport system ATP-binding protein
ABC transporter related {ECO:0000313|EMBL:ACL58334.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_expt_1000_bf_scaffold_5516_curated_17
bacterium YEK0313, Bacteria

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16088..16882
DNA (795bp) protein (265aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IVG9_RHOP2
Putative aliphatic sulfonates transport permease protein SsuC {ECO:0000313|EMBL:CEJ15222.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
binding-protein dependent transport system inner membrane protein; K02050 NitT/TauT family transport system permease protein
SCNpilot_expt_1000_bf_scaffold_5516_curated_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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16934..19054
DNA (2121bp) protein (707aa)
fadJ1; fatty acid oxidation complex subunit alpha (EC:1.1.1.35 4.2.1.17 5.1.2.3)
Fatty acid oxidation complex subunit alpha n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GXE4_CUPNN
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SCNpilot_expt_1000_bf_scaffold_5516_curated_19
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(19269..19640)
DNA (372bp) protein (124aa)
Uncharacterised protein {ECO:0000313|EMBL:CRE18611.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
SCNpilot_expt_1000_bf_scaffold_5516_curated_20
unknown

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comp(19971..20246)
DNA (276bp) protein (92aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5516_curated_21
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20627..21175
DNA (549bp) protein (183aa)
Acetyl-CoA synthetase (ADP-forming) {ECO:0000313|EMBL:EZP79329.1}; EC=6.2.1.13 {ECO:0000313|EMBL:EZP79329.1};; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI000375D569
acetyl-CoA synthetase
SCNpilot_expt_1000_bf_scaffold_5516_curated_22
Cupriavidus taiwanensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21172..22338
DNA (1167bp) protein (389aa)
acetyl-CoA acetyltransferase (EC:2.3.1.-); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
Putative nonspecific lipid-transfer protein, thiolase sterol carrier protein, ACETYL-COA C-ACETYLTRANSFERASE {ECO:0000313|EMBL:CAQ69173.1}; EC=2.3.1.- {ECO:0000313|EMBL:CAQ69173.1};; TaxID=164546 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis; (strain LMG 19424)).;"
Putative nonspecific lipid-transfer protein, thiolase sterol carrier protein, ACETYL-COA C-ACETYLTRANSFERASE n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3R4E1_CUPTR
SCNpilot_expt_1000_bf_scaffold_5516_curated_23
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22341..22736
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RLW9_9PROT
DNA-binding protein {ECO:0000313|EMBL:KGM31147.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein; K07068
SCNpilot_expt_1000_bf_scaffold_5516_curated_24
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22723..23343)
DNA (621bp) protein (207aa)
Nitrilotriacetate monooxygenase component B n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4QUZ4_9RHIZ
Flavin reductase {ECO:0000313|EMBL:KGM33823.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
nitrilotriacetate monooxygenase component B
SCNpilot_expt_1000_bf_scaffold_5516_curated_25
bacterium YEK0313, Bacteria

Not on your lists

comp(23346..24155)
DNA (810bp) protein (270aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IDW0_METNO
3-oxoacyl-[acyl-carrier-protein] reductase FabG {ECO:0000313|EMBL:CEJ14954.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
3-ketoacyl-ACP reductase
SCNpilot_expt_1000_bf_scaffold_5516_curated_26
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24181..24927)
DNA (747bp) protein (249aa)
fabG3; short-chain dehydrogenase (EC:1.1.1.-)
cyclopentanol dehydrogenase n=1 Tax=Martelella mediterranea RepID=UPI00037089BE
Cyclopentanol dehydrogenase {ECO:0000313|EMBL:KKB80680.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_expt_1000_bf_scaffold_5516_curated_27
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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25117..25881
DNA (765bp) protein (255aa)
IclR family transcriptional regulator n=1 Tax=Verrucosispora maris (strain AB-18-032) RepID=F4FGB4_VERMA
IclR family transcriptional regulator; K02624 IclR family transcriptional regulator, pca regulon regulatory protein
IclR family transcriptional regulator {ECO:0000313|EMBL:AEB45052.1}; TaxID=263358 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
Displaying 27 items

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