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SCNpilot_expt_1000_bf_scaffold_3197_curated

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3197_curated_1
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43..1005)
DNA (963bp) protein (321aa)
ornithine cyclodeaminase; K01750 ornithine cyclodeaminase [EC:4.3.1.12]
Ornithine cyclodeaminase/mu-crystallin family protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MBE1_RHISN
Ornithine cyclodeaminase/mu-crystallin family protein {ECO:0000313|EMBL:ACP27150.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_expt_1000_bf_scaffold_3197_curated_2
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1480..2316
DNA (837bp) protein (279aa)
spermidine/putrescine ABC transporter ATP-binding protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037266CF
Uncharacterized protein {ECO:0000313|EMBL:KEJ97541.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
spermidine/putrescine ABC transporter ATPase; K02052 putative spermidine/putrescine transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_3197_curated_3
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2317..3216
DNA (900bp) protein (300aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9KZF7_THERP
Uncharacterized protein {ECO:0000313|EMBL:AIB15775.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
binding-protein-dependent transport system inner membrane protein; K02054 putative spermidine/putrescine transport system permease protein
SCNpilot_expt_1000_bf_scaffold_3197_curated_4
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3213..4019
DNA (807bp) protein (269aa)
Putative Spermidine/putrescine ABC transpoter (Permease protein) n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AWP6_AZOBR
putative Spermidine/putrescine ABC transpoter (permease protein)
Putative Spermidine/putrescine ABC transpoter (Permease protein) {ECO:0000313|EMBL:CCD02305.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
SCNpilot_expt_1000_bf_scaffold_3197_curated_5
Marinithermus hydrothermalis, Marinithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

4030..5196
DNA (1167bp) protein (389aa)
formyl-CoA transferase (EC:2.8.3.16)
Formyl-CoA transferase {ECO:0000313|EMBL:AEB11361.1}; EC=2.8.3.16 {ECO:0000313|EMBL:AEB11361.1};; TaxID=869210 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Marinithermus.;" source="Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1).;"
Formyl-CoA transferase n=1 Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NQ50_MARHT
SCNpilot_expt_1000_bf_scaffold_3197_curated_6
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5257..6306
DNA (1050bp) protein (350aa)
Putative Spermidine/putrescine ABC transpoter (Substrate binding protein) n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AWP9_AZOBR
putative Spermidine/putrescine ABC transpoter (substrate binding protein)
Putative Spermidine/putrescine ABC transpoter (Substrate binding protein) {ECO:0000313|EMBL:CCD02308.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
SCNpilot_expt_1000_bf_scaffold_3197_curated_7
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6753..7289
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2S5G4_GEOOG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KJB91817.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
SCNpilot_expt_1000_bf_scaffold_3197_curated_8
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7987..8592
DNA (606bp) protein (202aa)
FAD dependent oxidoreductase n=1 Tax=Rhizobium lupini HPC(L) RepID=K5C0M1_RHILU
FAD-dependent oxidoreductase {ECO:0000313|EMBL:KAJ33866.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
FAD dependent oxidoreductase
SCNpilot_expt_1000_bf_scaffold_3197_curated_9
Alicyclobacillus hesperidum, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8814..9491
DNA (678bp) protein (226aa)
Transcriptional regulator, IclR family n=1 Tax=Alicyclobacillus hesperidum URH17-3-68 RepID=J9HEW4_9BACL
Transcriptional regulator, IclR family {ECO:0000313|EMBL:EJY56154.1}; TaxID=1200346 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus hesperidum URH17-3-68.;"
IclR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3197_curated_10
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

9513..10856
DNA (1344bp) protein (448aa)
peptidase M20 id=12554450 bin=CNBR_ACIDO species=Caldalkalibacillus thermarum genus=Caldalkalibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RBG_16_Actinobacteria_68_12_curated
SCNpilot_expt_1000_bf_scaffold_3197_curated_11
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

10980..11729
DNA (750bp) protein (250aa)
Creatinine amidohydrolase n=1 Tax=Salinarchaeum sp. Harcht-Bsk1 RepID=R4W990_9EURY
creatinine amidohydrolase
Tax=RBG_16_Armatimonadetes_67_12_curated
SCNpilot_expt_1000_bf_scaffold_3197_curated_12
Pelosinus fermentans, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

11726..12964
DNA (1239bp) protein (413aa)
Peptidase M29 aminopeptidase II n=1 Tax=Pelosinus fermentans DSM 17108 RepID=I9M5H4_9FIRM
Peptidase M29 aminopeptidase II {ECO:0000313|EMBL:EIW21007.1}; TaxID=1149862 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus fermentans B4.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3197_curated_13
R_NC10_66_22, NC10, Bacteria

Not on your lists

12961..13650
DNA (690bp) protein (230aa)
Isochorismatase family protein id=3635570 bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
entB; isochorismatase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
SCNpilot_expt_1000_bf_scaffold_3197_curated_14
unknown

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comp(13657..13989)
DNA (333bp) protein (111aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3197_curated_15
unknown

Not on your lists

14691..15158
DNA (468bp) protein (156aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3197_curated_16
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

15233..16168
DNA (936bp) protein (312aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C4Z6_SPHTD
binding-protein-dependent transport system inner membrane protein; K02033 peptide/nickel transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACZ39313.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
SCNpilot_expt_1000_bf_scaffold_3197_curated_17
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

16165..16992
DNA (828bp) protein (276aa)
Binding-protein-dependent transport system inner membrane protein id=4262074 bin=GWF2_Methylomirabilis_70_14 species=Planococcus antarcticus genus=Planococcus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transporters inner membrane component; K02034 peptide/nickel transport system permease protein
Tax=GWA2_Rokubacteria_70_23_curated
SCNpilot_expt_1000_bf_scaffold_3197_curated_18
Modestobacter sp. KNN45-2b, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16989..18011
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Actinomadura madurae LIID-AJ290 RepID=U2MT90_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KGH45646.1}; TaxID=1522368 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter sp. KNN45-2b.;"
peptide ABC transporter ATPase; K02031 peptide/nickel transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_3197_curated_19
Modestobacter sp. KNN45-2b, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18008..18997
DNA (990bp) protein (330aa)
peptide ABC transporter ATP-binding protein n=1 Tax=Actinokineospora enzanensis RepID=UPI0003781523
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGH45645.1}; TaxID=1522368 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter sp. KNN45-2b.;"
oligopeptide/dipeptide ABC transporter ATPase subunit; K02032 peptide/nickel transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_3197_curated_20
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18984..20105
DNA (1122bp) protein (374aa)
Opine oxidase subunit B {ECO:0000313|EMBL:CBS89776.1}; EC=1.-.-.- {ECO:0000313|EMBL:CBS89776.1};; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
Opine oxidase subunit B n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZDW4_AZOL4
ooxB; Opine oxidase subunit B
SCNpilot_expt_1000_bf_scaffold_3197_curated_21
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20089..20373
DNA (285bp) protein (95aa)
Putative sarcosine oxidase alpha subunit n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7T5V5_ALCXX
2Fe-2S iron-sulfur cluster-binding domain protein {ECO:0000313|EMBL:KCB43192.1}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3197_curated_22
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20366..21787
DNA (1422bp) protein (474aa)
Opine oxidase subunit A {ECO:0000313|EMBL:CCE10392.1}; EC=1.-.-.- {ECO:0000313|EMBL:CCE10392.1};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
Opine oxidase subunit A n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TVA4_9BRAD
opine oxidase subunit A
SCNpilot_expt_1000_bf_scaffold_3197_curated_23
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22064..22633)
DNA (570bp) protein (190aa)
Transcriptional regulator, TetR family n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q217L0_RHOPB
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABD87426.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_1000_bf_scaffold_3197_curated_24
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22844..24061
DNA (1218bp) protein (406aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI0003811003
Uncharacterized protein {ECO:0000313|EMBL:KJS13097.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
resistance nodulation cell division (RND) drug efflux pump, MFP component
SCNpilot_expt_1000_bf_scaffold_3197_curated_25
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24058..27210
DNA (3153bp) protein (1051aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI0003671797
Multidrug transporter {ECO:0000313|EMBL:KKB77705.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
multidrug ABC transporter; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
SCNpilot_expt_1000_bf_scaffold_3197_curated_26
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27173..28123)
DNA (951bp) protein (317aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI0003785704
Transcriptional regulator {ECO:0000313|EMBL:EJC63967.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3197_curated_27
unknown

Not on your lists

28887..29057
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3197_curated_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29375..30091
DNA (717bp) protein (239aa)
tftE; putative maleylacetate reductase (EC:1.3.1.32); K00217 maleylacetate reductase [EC:1.3.1.32]
Maleylacetate reductase n=1 Tax=Rhizobium leguminosarum RepID=UPI00037C0AC7
Alcohol dehydrogenase, class IV {ECO:0000313|EMBL:EYR84508.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_3197_curated_29
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30115..31395
DNA (1281bp) protein (427aa)
ABC transporter substrate-binding protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003634D1B
Leu/Ile/Val-binding protein homolog 5 {ECO:0000313|EMBL:CDM58948.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_3197_curated_30
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31448..32167
DNA (720bp) protein (240aa)
Putative ATP-binding ABC transporter component n=1 Tax=Rhizobium sp. CCGE 510 RepID=J5PPP3_9RHIZ
Putative ATP-binding ABC transporter component {ECO:0000313|EMBL:EJT01943.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
putative ATP-binding ABC transporter component; K01995 branched-chain amino acid transport system ATP-binding protein
Displaying items 1-30 of 34 in total

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