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SCNpilot_expt_1000_bf_scaffold_7296_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7296_curated_1
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..795
DNA (795bp) protein (265aa)
monooxygenase FAD-binding; K10676 2,4-dichlorophenol 6-monooxygenase [EC:1.14.13.20]
Monooxygenase FAD-binding protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QZH5_9RHIZ
Monooxygenase FAD-binding protein {ECO:0000313|EMBL:EKF61032.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
SCNpilot_expt_1000_bf_scaffold_7296_curated_2
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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801..1682
DNA (882bp) protein (294aa)
intradiol ring-cleavage dioxygenase; K03381 catechol 1,2-dioxygenase [EC:1.13.11.1]
6-chlorohydroxyquinol-1,2-dioxygenase n=1 Tax=Rhizobium leguminosarum RepID=UPI00037FB489
Hydroxyquinol 1,2-dioxygenase {ECO:0000313|EMBL:ENN84617.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_expt_1000_bf_scaffold_7296_curated_3
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1844..2539)
DNA (696bp) protein (232aa)
GntR family transcriptional regulator n=1 Tax=Cupriavidus basilensis OR16 RepID=H1SHY2_9BURK
HTH-type transcriptional repressor CsiR {ECO:0000313|EMBL:AIO36240.1}; TaxID=95486 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_7296_curated_4
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2664..3560
DNA (897bp) protein (299aa)
Fumarylacetoacetate (FAA) hydrolase family protein 10 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HHE1_ACHXA
Fumarylacetoacetate hydrolase {ECO:0000313|EMBL:EYS84951.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
fumarylacetoacetate hydrolase
SCNpilot_expt_1000_bf_scaffold_7296_curated_5
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4053..4265
DNA (213bp) protein (71aa)
Putative oxidoreductase, SDR family n=1 Tax=Variovorax paradoxus B4 RepID=T1X5F0_VARPD
Uncharacterized protein {ECO:0000313|EMBL:KHQ95712.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
putative oxidoreductase, SDR family
SCNpilot_expt_1000_bf_scaffold_7296_curated_6

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4335..5324
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000300E356
Bacterial extracellular solute-binding protein, family 7 {ECO:0000313|EMBL:AGU10620.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
TRAP dicarboxylate transporter subunit DctP
SCNpilot_expt_1000_bf_scaffold_7296_curated_7
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5384..5914
DNA (531bp) protein (177aa)
UPI0003CF1536 related cluster n=1 Tax=unknown RepID=UPI0003CF1536
Uncharacterized protein {ECO:0000313|EMBL:ESY79824.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
tripartite ATP-independent periplasmic transporter DctQ
SCNpilot_expt_1000_bf_scaffold_7296_curated_8

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5919..7211
DNA (1293bp) protein (431aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002FD648B
DctM-like transporter {ECO:0000313|EMBL:AGU10594.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
TRAP dicarboxylate transporter subunit DctM
SCNpilot_expt_1000_bf_scaffold_7296_curated_9
Burkholderia gladioli, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7227..7547
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000319824A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA60807.1}; TaxID=999541 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia gladioli (strain BSR3).;"
SCNpilot_expt_1000_bf_scaffold_7296_curated_10
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7560..8519
DNA (960bp) protein (320aa)
UDP-glucose 4-epimerase (EC:5.1.3.2); K01784 UDP-glucose 4-epimerase [EC:5.1.3.2]
UDP-glucose 4-epimerase {ECO:0000313|EMBL:CAJ95084.1}; EC=5.1.3.2 {ECO:0000313|EMBL:CAJ95084.1};; TaxID=381666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337); (Ralstonia eutropha).;"
UDP-glucose 4-epimerase n=1 Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q0K4J0_CUPNH
SCNpilot_expt_1000_bf_scaffold_7296_curated_11
unknown

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8624..8893
DNA (270bp) protein (90aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7296_curated_12
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9101..9607)
DNA (507bp) protein (169aa)
Transcriptional regulator, DeoR family n=1 Tax=Rhodobacter sp. SW2 RepID=C8S158_9RHOB
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:EEW25256.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
DeoR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_7296_curated_13
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10237..11379)
DNA (1143bp) protein (381aa)
ribulose bisphosphate carboxylase large chain; K01601 ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit n=1 Tax=Rhodobacter sp. SW2 RepID=C8S164_9RHOB
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit {ECO:0000313|EMBL:EEW25262.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
RLP (RuBisCO IV), not in cbb Rose Kantor (11/19/15)
SCNpilot_expt_1000_bf_scaffold_7296_curated_14
Oceaniovalibus guishaninsula, Oceaniovalibus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11379..12383)
DNA (1005bp) protein (335aa)
transketolase central region; K00615 transketolase [EC:2.2.1.1]
transketolase n=1 Tax=Ahrensia kielensis RepID=UPI000365FE13
Transketolase {ECO:0000313|EMBL:EKE43214.1}; TaxID=1231392 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceaniovalibus.;" source="Oceaniovalibus guishaninsula JLT2003.;"
SCNpilot_expt_1000_bf_scaffold_7296_curated_15
Oceanicola granulosus, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12393..13319)
DNA (927bp) protein (309aa)
transketolase domain-containing protein; K00615 transketolase [EC:2.2.1.1]
Putative transketolase alpha subunit protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CJ96_9RHOB
Putative transketolase alpha subunit protein {ECO:0000313|EMBL:EAR52704.1}; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola granulosus (strain ATCC BAA-861 / DSM 15982 / KCTC 12143 /; HTCC2516).;"
SCNpilot_expt_1000_bf_scaffold_7296_curated_16
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13355..14188)
DNA (834bp) protein (278aa)
Purine nucleoside phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; EC=2.4.2.1 {ECO:0000256|PIRNR:PIRNR000477};; Inosine-guanosine phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
inosine guanosine and xanthosine phosphorylase family protein; K03783 purine-nucleoside phosphorylase [EC:2.4.2.1]
Purine nucleoside phosphorylase n=1 Tax=Nitratireductor indicus C115 RepID=K2NPW3_9RHIZ
SCNpilot_expt_1000_bf_scaffold_7296_curated_17
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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15023..15457
DNA (435bp) protein (145aa)
Methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000256|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000256|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:0000256|HAMAP-Rule:MF_01678};; S-methyl-5-thioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
mtnA; methylthioribose-1-phosphate isomerase (EC:5.3.1.23); K08963 methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
methylthioribose-1-phosphate isomerase n=1 Tax=Martelella mediterranea RepID=UPI00037C794C
SCNpilot_expt_1000_bf_scaffold_7296_curated_18
unknown

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comp(16475..16660)
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7296_curated_19
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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17549..17704
DNA (156bp) protein (52aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000360A12B
Molybdopterin oxidoreductase {ECO:0000313|EMBL:EKE70282.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
biotin sulfoxide reductase
Displaying 19 items

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