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SCNpilot_expt_1000_bf_scaffold_2201_curated

Search features with annotation key words

Displaying items 1-30 of 87 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2201_curated_1
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1015
DNA (1014bp) protein (338aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I0I9_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK53494.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein; K15270 S-adenosylmethionine uptake transporter
SCNpilot_expt_1000_bf_scaffold_2201_curated_2
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(879..1928)
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S712_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EHP41823.1}; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis OR16.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2201_curated_3
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2423..3274)
DNA (852bp) protein (284aa)
phage SPO1 DNA polymerase-related protein; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7]
Phage SPO1 DNA polymerase-related protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11JW9_MESSB
Phage SPO1 DNA polymerase-related protein {ECO:0000313|EMBL:ABG62306.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_2201_curated_4
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3476..5155
DNA (1680bp) protein (560aa)
Putative electron transfer flavoprotein dehydrogenases {ECO:0000313|EMBL:CDX30988.1}; EC=1.5.5.1 {ECO:0000313|EMBL:CDX30988.1};; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
electron transfer flavoprotein dehydrogenase; K00311 electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] rbh
electron transfer flavoprotein-ubiquinone oxidoreductase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003179BB5
SCNpilot_expt_1000_bf_scaffold_2201_curated_5
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5248..6234)
DNA (987bp) protein (329aa)
Endonuclease/exonuclease/phosphatase n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BZE0_9RHIZ
Endonuclease/exonuclease/phosphatase {ECO:0000313|EMBL:EIM74942.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2201_curated_6
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6254..7201)
DNA (948bp) protein (316aa)
AMP nucleosidase {ECO:0000256|HAMAP-Rule:MF_01932}; EC=3.2.2.4 {ECO:0000256|HAMAP-Rule:MF_01932};; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
AMP nucleosidase; K01241 AMP nucleosidase [EC:3.2.2.4]
AMP nucleosidase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N6H2_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2201_curated_7
unknown

Not on your lists

comp(7809..7991)
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2201_curated_8
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8030..8197)
DNA (168bp) protein (56aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I0K0_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK53505.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_expt_1000_bf_scaffold_2201_curated_9
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8497..8841)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3J8K8_9RHIZ
Glycerol-3-phosphate ABC transporter ATP-binding protein {ECO:0000313|EMBL:EXL10036.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2201_curated_10
unknown

Not on your lists

comp(8888..8989)
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2201_curated_11
Mesorhizobium sp. LNJC391B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9264..9521
DNA (258bp) protein (86aa)
UPI0003CE8548 related cluster n=1 Tax=unknown RepID=UPI0003CE8548
Uncharacterized protein {ECO:0000313|EMBL:ESY29695.1}; TaxID=1287273 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC391B00.;"
Sel1 domain-containing protein repeat-containing protein; K07126
SCNpilot_expt_1000_bf_scaffold_2201_curated_12
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9651..9953)
DNA (303bp) protein (101aa)
Plasmid maintenance system antidote protein, XRE family n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2ISH0_RHOP2
XRE family transcriptional regulator {ECO:0000313|EMBL:KFL26284.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
XRE family plasmid maintenance system antidote protein
SCNpilot_expt_1000_bf_scaffold_2201_curated_13
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9963..11894)
DNA (1932bp) protein (644aa)
Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial {ECO:0000313|EMBL:CDX29175.1}; EC=6.4.1.4 {ECO:0000313|EMBL:CDX29175.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
carbamoyl-phosphate synthase L chain ATP-binding protein (EC:6.4.1.4); K01968 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4]
UPI0003D06E1A related cluster n=1 Tax=unknown RepID=UPI0003D06E1A
SCNpilot_expt_1000_bf_scaffold_2201_curated_14
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11993..12589
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11JV8_MESSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG62317.1}; Flags: Precursor;; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_2201_curated_15
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12631..13017)
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002E6833E
Putative uncharacterized protein {ECO:0000313|EMBL:EHK53477.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2201_curated_16
Mesorhizobium sp. LSHC422A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13017..14624)
DNA (1608bp) protein (536aa)
acetyl/propionyl CoA carboxylase subunit beta; K01969 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4] rbh
UPI0003CF2594 related cluster n=1 Tax=unknown RepID=UPI0003CF2594
Methylcrotonoyl-CoA carboxylase {ECO:0000313|EMBL:ESX56266.1}; TaxID=1287294 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC422A00.;"
SCNpilot_expt_1000_bf_scaffold_2201_curated_17
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14633..15013)
DNA (381bp) protein (127aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
Uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9DC27_9RHIZ
PilT protein domain-containing protein
SCNpilot_expt_1000_bf_scaffold_2201_curated_18
unknown

Not on your lists

comp(15010..15252)
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2201_curated_19
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15439..16602)
DNA (1164bp) protein (388aa)
isovaleryl-CoA dehydrogenase; K00253 isovaleryl-CoA dehydrogenase [EC:1.3.8.4]
Isovaleryl-CoA dehydrogenase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MI76_9RHIZ
Isovaleryl-CoA dehydrogenase {ECO:0000313|EMBL:EKF20420.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_expt_1000_bf_scaffold_2201_curated_20
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16595..17239)
DNA (645bp) protein (215aa)
TetR family transcriptional regulator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I0L6_9RHIZ
TetR family transcriptional regulator {ECO:0000313|EMBL:EHK53483.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2201_curated_21
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17394..17648
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003085ADB
Uncharacterized protein {ECO:0000313|EMBL:ESW88842.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
Protein of unknown function (DUF3175)
SCNpilot_expt_1000_bf_scaffold_2201_curated_22
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17961..18209
DNA (249bp) protein (83aa)
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00037665F9
Transcriptional regulator {ECO:0000313|EMBL:EPE95587.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
transcriptional regulator, MarR family
SCNpilot_expt_1000_bf_scaffold_2201_curated_23
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18306..19226
DNA (921bp) protein (307aa)
MarR family transcriptional regulator n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00035C36BB
N-acetyltransferase
Putative N-acetyltransferase {ECO:0000313|EMBL:ACP21727.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_expt_1000_bf_scaffold_2201_curated_24
Rhodovulum sulfidophilum, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19133..19531)
DNA (399bp) protein (133aa)
Acylphosphatase {ECO:0000256|RuleBase:RU000553}; EC=3.6.1.7 {ECO:0000256|RuleBase:RU000553};; TaxID=35806 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sulfidophilum (Rhodobacter sulfidophilus).;"
acylphosphatase (EC:3.6.1.7); K01512 acylphosphatase [EC:3.6.1.7]
acylphosphatase n=1 Tax=Rhizobium phaseoli RepID=UPI00036E579C
SCNpilot_expt_1000_bf_scaffold_2201_curated_25
Mesorhizobium sp. L103C105A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19555..20268)
DNA (714bp) protein (238aa)
Histidinol-phosphate aminotransferase {ECO:0000313|EMBL:ESZ75110.1}; EC=2.6.1.9 {ECO:0000313|EMBL:ESZ75110.1};; TaxID=1287074 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C105A0.;"
class I and II aminotransferase; K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9]
UPI0003CFD2FA related cluster n=1 Tax=unknown RepID=UPI0003CFD2FA
SCNpilot_expt_1000_bf_scaffold_2201_curated_26
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20854..21534)
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QXX1_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EGF94615.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2201_curated_27
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21835..22794)
DNA (960bp) protein (320aa)
Integrase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y2Z9_9RHIZ
Integrase {ECO:0000313|EMBL:KFB10599.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
site-specific recombinase XerD
SCNpilot_expt_1000_bf_scaffold_2201_curated_28
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23086..23760)
DNA (675bp) protein (225aa)
Porin subfamily n=1 Tax=Phyllobacterium sp. YR531 RepID=J3CB33_9RHIZ
Porin subfamily {ECO:0000313|EMBL:EJN02089.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
SCNpilot_expt_1000_bf_scaffold_2201_curated_29
unknown

Not on your lists

25443..25808
DNA (366bp) protein (122aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2201_curated_30
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25976..26872)
DNA (897bp) protein (299aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HQQ9_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK56974.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein rbh
Displaying items 1-30 of 87 in total

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