ggKbase home page

SCNpilot_expt_1000_bf_scaffold_6373_curated

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6373_curated_1

Not on your lists

3..938
DNA (936bp) protein (312aa)
monosaccharide-transporting ATPase; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
Monosaccharide-transporting ATPase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CUM0_PSEUX
Uncharacterized protein {ECO:0000313|EMBL:KGA18386.1}; TaxID=449393 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="freshwater metagenome.;"
SCNpilot_expt_1000_bf_scaffold_6373_curated_2
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

935..1951
DNA (1017bp) protein (339aa)
putative deacylase id=24537696 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Crenarchaeota tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
hypothetical protein; K06987
Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
SCNpilot_expt_1000_bf_scaffold_6373_curated_3
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1988..2986)
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YGX1_MESOW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH86917.1}; Flags: Precursor;; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_6373_curated_4
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3056..4093)
DNA (1038bp) protein (346aa)
Putative membrane protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RIW1_9RHIZ
Putative membrane protein {ECO:0000313|EMBL:ESR25264.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
NiCoT family transporter
SCNpilot_expt_1000_bf_scaffold_6373_curated_5
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4090..4563)
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000380B7E4
hypothetical protein
PF06226 family protein {ECO:0000313|EMBL:KCV59750.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
SCNpilot_expt_1000_bf_scaffold_6373_curated_6
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4796..5224)
DNA (429bp) protein (143aa)
UPI0003CFA666 related cluster n=1 Tax=unknown RepID=UPI0003CFA666
Uncharacterized protein {ECO:0000313|EMBL:ESZ08530.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
ferric uptake regulator family protein; K09823 Fur family transcriptional regulator, zinc uptake regulator
SCNpilot_expt_1000_bf_scaffold_6373_curated_7
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5324..6124
DNA (801bp) protein (267aa)
UPI0003D03AD2 related cluster n=1 Tax=unknown RepID=UPI0003D03AD2
ABC transporter {ECO:0000313|EMBL:ESZ08529.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
ATPase component of Mn/Zn ABC-type transporter
SCNpilot_expt_1000_bf_scaffold_6373_curated_8
Roseibium sp. TrichSKD4, Roseibium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6124..6999
DNA (876bp) protein (292aa)
ABC transporter, membrane spanning protein n=1 Tax=Roseibium sp. TrichSKD4 RepID=E2CSH2_9RHOB
ABC transporter, membrane spanning protein {ECO:0000313|EMBL:EFO28744.1}; TaxID=744980 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibium.;" source="Roseibium sp. TrichSKD4.;"
ABC transporter; K02075 zinc/manganese transport system permease protein
SCNpilot_expt_1000_bf_scaffold_6373_curated_9
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7017..8012
DNA (996bp) protein (332aa)
UPI0003D03543 related cluster n=1 Tax=unknown RepID=UPI0003D03543
Metal ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESZ21256.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
ABC transporter substrate binding protein; K02077 zinc/manganese transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_6373_curated_10
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8098..9309
DNA (1212bp) protein (404aa)
UPI0003CFB5F7 related cluster n=1 Tax=unknown RepID=UPI0003CFB5F7
Uncharacterized protein {ECO:0000313|EMBL:ESZ08523.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6373_curated_11
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9399..10622
DNA (1224bp) protein (408aa)
UPI0003D05BCB related cluster n=1 Tax=unknown RepID=UPI0003D05BCB
Uncharacterized protein {ECO:0000313|EMBL:EXL09286.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
cobalamin synthesis protein
SCNpilot_expt_1000_bf_scaffold_6373_curated_12
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11341..13674)
DNA (2334bp) protein (778aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00049969}; EC=2.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00050077};; Cobalamin-independent methionine synthase {ECO:0000256|HAMAP-Rule:MF_00172}; Methionine synthase, vitamin-B12 independent isozyme {ECO:0000256|HAMAP-Rule:MF_00172}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Meso
5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (EC:2.1.1.14); K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] rbh
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F289_9RHIZ
SCNpilot_expt_1000_bf_scaffold_6373_curated_13
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14196..15788
DNA (1593bp) protein (531aa)
Extracellular solute-binding protein family 5 n=1 Tax=Burkholderia sp. H160 RepID=B5WU82_9BURK
Putative ABC transporter peptide-binding protein BRA0409 {ECO:0000313|EMBL:CDM60789.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
oligopeptide ABC transporter substrate-binding protein; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_6373_curated_14
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16521..16721
DNA (201bp) protein (67aa)
Inner membrane component of binding-protein-dependent transport system n=2 Tax=Bordetella bronchiseptica RepID=K4QP32_BORBO
binding-protein-dependent transport system inner membrane protein
Inner membrane component of binding-protein-dependent transport system {ECO:0000313|EMBL:CCN25282.1}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 1289.;"
SCNpilot_expt_1000_bf_scaffold_6373_curated_15
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

16714..17391
DNA (678bp) protein (226aa)
Putative oligopeptide ABC transporter permease protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HYR8_CALAS
putative oligopeptide ABC transporter permease; K02034 peptide/nickel transport system permease protein
Putative oligopeptide ABC transporter permease protein {ECO:0000313|EMBL:BAL98155.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
SCNpilot_expt_1000_bf_scaffold_6373_curated_16
unknown

Not on your lists

17436..17573
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6373_curated_17
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17566..17934
DNA (369bp) protein (123aa)
Oligopeptide/dipeptide ABC transporter ATP-binding protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MM81_CORCM
oppD; oligopeptide/dipeptide ABC transporter ATP-binding protein
Oligopeptide/dipeptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:AFE09697.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
Displaying 17 items

View Taxonomy