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SCNpilot_expt_1000_bf_scaffold_3304_curated

Search features with annotation key words

Displaying items 1-30 of 72 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3304_curated_1
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1007)
DNA (1005bp) protein (335aa)
nitrogen fixation protein fixI; K01529 [EC:3.6.1.-]
UPI0003D02E25 related cluster n=1 Tax=unknown RepID=UPI0003D02E25
Nitrogen fixation protein FixI {ECO:0000313|EMBL:EZQ15847.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
SCNpilot_expt_1000_bf_scaffold_3304_curated_2
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1004..1471)
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000304EBA6
Cytochrome oxidase {ECO:0000313|EMBL:EZQ15846.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
fixh family protein
SCNpilot_expt_1000_bf_scaffold_3304_curated_3
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1476..2171)
DNA (696bp) protein (232aa)
nitrogen fixation protein fixG n=1 Tax=Rhizobium loti RepID=UPI00036D7843
Nitrogen fixation protein FixG {ECO:0000313|EMBL:EXL06718.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
cytochrome c oxidase accessory protein CcoG
SCNpilot_expt_1000_bf_scaffold_3304_curated_4
unknown

Not on your lists

2880..2969
DNA (90bp) protein (30aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3304_curated_5
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3264..4118)
DNA (855bp) protein (285aa)
cytochrome CBB3 n=1 Tax=Hoeflea sp. 108 RepID=UPI0003719D18
Cbb3-type cytochrome c oxidase subunit {ECO:0000256|PIRNR:PIRNR000006}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
cytochrome-c oxidase subunit FixP; K00406 cytochrome c oxidase cbb3-type subunit III rbh
SCNpilot_expt_1000_bf_scaffold_3304_curated_6
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4120..4272)
DNA (153bp) protein (51aa)
ccoQ; cytochrome c oxidase, Cbb3-type, CcoQ subunit (EC:1.9.3.1); K00407 cytochrome c oxidase cbb3-type subunit IV
FixQ1 nitrogen fixation protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E9C9A6
Nitrogen fixation protein FixQ {ECO:0000313|EMBL:EZQ15843.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
SCNpilot_expt_1000_bf_scaffold_3304_curated_7
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4282..5013)
DNA (732bp) protein (244aa)
fixO2; FixO2 cytochrome c oxidase subunit (EC:1.9.3.1)
Cytochrome c oxidase subunit FixO n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D520_9RHIZ
Peptidase S41 {ECO:0000313|EMBL:EXL06721.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
SCNpilot_expt_1000_bf_scaffold_3304_curated_8
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5026..5256)
DNA (231bp) protein (77aa)
cytochrome c oxidase, cbb3-type subunit I (EC:1.9.3.1); K00404 cytochrome c oxidase cbb3-type subunit I [EC:1.9.3.1]
Cytochrome c oxidase, cbb3-type, subunit I n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y066_MESOW
Peptidase S41 {ECO:0000313|EMBL:EZQ15841.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
SCNpilot_expt_1000_bf_scaffold_3304_curated_9
unknown

Not on your lists

5545..5691
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3304_curated_10
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5807..6634)
DNA (828bp) protein (276aa)
cbb3-type cytochrome C oxidase subunit I; K00404 cytochrome c oxidase cbb3-type subunit I [EC:1.9.3.1] rbh
Cytochrome-c oxidase FixN chain n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q988R2_RHILO
Peptidase S41 {ECO:0000313|EMBL:EZQ15841.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
SCNpilot_expt_1000_bf_scaffold_3304_curated_11
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6808..7302
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y065_MESOW
Uncharacterized protein {ECO:0000313|EMBL:EXL06723.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3304_curated_12
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7343..8032)
DNA (690bp) protein (230aa)
Fnr-type transcriptional regulator n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YLQ7_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EZQ15839.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
cAMP-binding protein
SCNpilot_expt_1000_bf_scaffold_3304_curated_13
Pseudomonas chlororaphis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8266..9003)
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037DA756
Uncharacterized protein {ECO:0000313|EMBL:AKA23580.1}; TaxID=587753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chlororaphis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3304_curated_14
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9069..9533)
DNA (465bp) protein (155aa)
L-PSP family endoribonuclease n=1 Tax=Rhizobium leguminosarum RepID=UPI00036AC7F3
endoribonuclease L-PSP
Endoribonuclease L-PSP {ECO:0000313|EMBL:ADG83103.1}; TaxID=635013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source="Thermincola potens (strain JR).;"
SCNpilot_expt_1000_bf_scaffold_3304_curated_15
unknown

Not on your lists

10654..10836
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3304_curated_16
unknown

Not on your lists

10924..11058
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3304_curated_17
unknown

Not on your lists

11401..11751
DNA (351bp) protein (117aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3304_curated_18
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11708..12877)
DNA (1170bp) protein (390aa)
amino acid ABC transporter permease n=1 Tax=Rhizobium leguminosarum RepID=UPI00036C1942
ABC transporter permease {ECO:0000313|EMBL:ETF01459.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
amino acid ABC transporter permease
SCNpilot_expt_1000_bf_scaffold_3304_curated_19
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12946..13977)
DNA (1032bp) protein (344aa)
amino acid ABC transporter substrate-binding protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000361EE5F
Lysine-arginine-ornithine-binding periplasmic protein {ECO:0000313|EMBL:EFH09324.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
family 3 extracellular solute-binding protein; K09969 general L-amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_3304_curated_20
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14087..15187)
DNA (1101bp) protein (367aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI000381B0F8
NnrS
NnrS {ECO:0000313|EMBL:ABG61259.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_3304_curated_21
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15207..16715)
DNA (1509bp) protein (503aa)
3-octaprenyl-4hydroxybenzoate decarboxylase (EC:4.1.1.-); K03182 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD [EC:4.1.1.-]
3-octaprenyl-4hydroxybenzoate decarboxylase {ECO:0000313|EMBL:ABG61263.1}; EC=4.1.1.- {ECO:0000313|EMBL:ABG61263.1};; Flags: Precursor;; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
3-octaprenyl-4hydroxybenzoate decarboxylase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11MV6_MESSB
SCNpilot_expt_1000_bf_scaffold_3304_curated_22
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16836..17390
DNA (555bp) protein (185aa)
Putative lipid carrier protein-like protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11MV4_MESSB
putative lipid carrier protein-like
Putative lipid carrier protein-like protein {ECO:0000313|EMBL:ABG61265.1}; Flags: Precursor;; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_3304_curated_23
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17387..18391
DNA (1005bp) protein (335aa)
peptidase U32; K08303 putative protease [EC:3.4.-.-]
Peptidase U32 n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11MV3_MESSB
Peptidase U32 {ECO:0000313|EMBL:ABG61266.1}; Flags: Precursor;; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_3304_curated_24
unknown

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comp(18464..18733)
DNA (270bp) protein (90aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3304_curated_25
unknown

Not on your lists

19886..20122
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3304_curated_26
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20581..20745
DNA (165bp) protein (55aa)
Uncharacterized protein n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9QB36_9RHOB
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
SCNpilot_expt_1000_bf_scaffold_3304_curated_27
unknown

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comp(20694..20894)
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3304_curated_28

Not on your lists

21338..23062
DNA (1725bp) protein (575aa)
cytochrome c oxidase subunit I; K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
Cytochrome c oxidase (B(O/a)3-type) chain I n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9RTA5_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKN61728.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_expt_1000_bf_scaffold_3304_curated_29

Not on your lists

23085..23948
DNA (864bp) protein (288aa)
polyprenyltransferase; K02301 protoheme IX farnesyltransferase [EC:2.5.1.-]
Protoheme IX farnesyltransferase n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9RGG0_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKN61727.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_expt_1000_bf_scaffold_3304_curated_30

Not on your lists

23954..24763
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9Q727_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKN61726.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein; K07152
Displaying items 1-30 of 72 in total

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