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SCNpilot_expt_1000_bf_scaffold_944_curated

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_944_curated_1
unknown

Not on your lists

comp(1..78)
DNA (78bp) protein (26aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_944_curated_2
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

630..932
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. IRBG74 RepID=U4PPE3_9RHIZ
conserved exported protein of unknown function
Uncharacterized protein {ECO:0000313|EMBL:CDI06968.1}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
SCNpilot_expt_1000_bf_scaffold_944_curated_3
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1081..1692
DNA (612bp) protein (204aa)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hisB; imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
Imidazoleglycerol-phosphate dehydratase n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BWN2_9RHIZ
SCNpilot_expt_1000_bf_scaffold_944_curated_4
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1813..2292
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MP01_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF19007.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_944_curated_5
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2294..3202
DNA (909bp) protein (303aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
hisH; imidazole glycerol phosphate synthase subunit HisH (EC:2.4.2.-); K02501 glutamine amidotransferase [EC:2.4.2.-] rbh
imidazole glycerol phosphate synthase n=1 Tax=Rhizobium loti RepID=UPI000376C500
SCNpilot_expt_1000_bf_scaffold_944_curated_6
unknown

Not on your lists

comp(3313..3723)
DNA (411bp) protein (137aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_944_curated_7
unknown

Not on your lists

comp(3977..5215)
DNA (1239bp) protein (413aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_944_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5428..5538
DNA (111bp) protein (37aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3Z3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78910.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_944_curated_9
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5535..6320
DNA (786bp) protein (262aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
imidazole glycerol phosphate synthase subunit HisF (EC:5.3.1.16); K02500 cyclase [EC:4.1.3.-]
imidazole glycerol phosphate synthase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031EB052
SCNpilot_expt_1000_bf_scaffold_944_curated_10
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6362..6679
DNA (318bp) protein (106aa)
Phosphoribosyl-ATP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071052}; Short=PRA-PH {ECO:0000256|HAMAP-Rule:MF_01020};; EC=3.6.1.31 {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071044};; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
phosphoribosyl-ATP diphosphatase (EC:3.6.1.31); K01523 phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
Phosphoribosyl-ATP pyrophosphatase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y793_9RHIZ
SCNpilot_expt_1000_bf_scaffold_944_curated_11
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6679..7662
DNA (984bp) protein (328aa)
Pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_00215, ECO:0000256|RuleBase:RU003530}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_00215, ECO:0000256|RuleBase:RU003530};; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_00215}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
pantothenate kinase (EC:2.7.1.33); K00867 type I pantothenate kinase [EC:2.7.1.33] rbh
Pantothenate kinase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HKV0_9RHIZ
SCNpilot_expt_1000_bf_scaffold_944_curated_12
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7813..8319)
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000311C4BB
Peptidoglycan-binding protein LysM {ECO:0000313|EMBL:KJS07761.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
peptidoglycan-binding lysin domain-containing protein
SCNpilot_expt_1000_bf_scaffold_944_curated_13
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8394..10586)
DNA (2193bp) protein (731aa)
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
phosphoenolpyruvate carboxykinase; K01610 phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
Phosphoenolpyruvate carboxykinase [ATP] n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BWM0_9RHIZ
SCNpilot_expt_1000_bf_scaffold_944_curated_14
Mesorhizobium sp. L2C085B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10838..11557
DNA (720bp) protein (240aa)
Two-component transcriptional regulatory protein ChvI n=2 Tax=Mesorhizobium RepID=M5EVX0_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:ESZ09472.1}; TaxID=1287117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C085B000.;"
winged helix family two component transcriptional regulator; K14981 two-component system, OmpR family, response regulator ChvI
SCNpilot_expt_1000_bf_scaffold_944_curated_15
unknown

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comp(11766..12038)
DNA (273bp) protein (91aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_944_curated_16
Mesorhizobium sp. LSJC277A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12280..13362
DNA (1083bp) protein (361aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1287334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC277A00.;"
ATPase domain-containing protein; K14980 two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3]
UPI0003CF009A related cluster n=1 Tax=unknown RepID=UPI0003CF009A
SCNpilot_expt_1000_bf_scaffold_944_curated_17
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13364..13813
DNA (450bp) protein (150aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HKU2_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK58790.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_944_curated_18
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14002..14403
DNA (402bp) protein (134aa)
PTS system fructose subfamily IIA component; K02793 PTS system, mannose-specific IIA component [EC:2.7.1.69]
PTS fructose transporter subunit IIA n=1 Tax=Hoeflea sp. 108 RepID=UPI0003637BC7
PTS system fructose subfamily IIA component {ECO:0000313|EMBL:CDX37395.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
SCNpilot_expt_1000_bf_scaffold_944_curated_19
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14400..14696
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037D7692
Phosphocarrier, HPr family {ECO:0000313|EMBL:EEQ96974.1}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
HPr family phosphocarrier protein; K11189 phosphocarrier protein
SCNpilot_expt_1000_bf_scaffold_944_curated_20
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14711..14953)
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T2W7_CAUSK
Uncharacterized protein {ECO:0000313|EMBL:KJV08550.1}; TaxID=552518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_944_curated_21

Not on your lists

comp(14950..15264)
DNA (315bp) protein (105aa)
Protein containing DUF132 n=2 Tax=mine drainage metagenome RepID=T0YK07_9ZZZZ
Protein containing DUF132 {ECO:0000313|EMBL:EQD33493.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
twitching motility protein PilT
SCNpilot_expt_1000_bf_scaffold_944_curated_22
RBG_19FT_COMBO_Nitrospirae_55_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(15562..15852)
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Xanthomonas vasicola RepID=UPI00037BA10F
Tax=RBG_19FT_COMBO_Nitrospirae_55_12_curated
SCNpilot_expt_1000_bf_scaffold_944_curated_23
Ponticoccus sp. UMTAT08, Ponticoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15880..16137)
DNA (258bp) protein (86aa)
Uncharacterized protein {ECO:0000313|EMBL:KHQ49717.1}; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTAT08.;"
SCNpilot_expt_1000_bf_scaffold_944_curated_24
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16475..16909
DNA (435bp) protein (145aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1]
Adenosylhomocysteinase n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y1R7_MESOW
SCNpilot_expt_1000_bf_scaffold_944_curated_25
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17106..19643
DNA (2538bp) protein (846aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ATPase domain-containing protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HKT8_9RHIZ
signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_944_curated_26
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19959..21155
DNA (1197bp) protein (399aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HKT7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX37406.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hypothetical protein; K06925 UPF0079 ATP-binding protein; K07102 rbh
SCNpilot_expt_1000_bf_scaffold_944_curated_27
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21152..21874
DNA (723bp) protein (241aa)
mannose-1-phosphate guanylyltransferase n=1 Tax=Rhizobium loti RepID=UPI00035F935C
Nucleotidyl transferase family protein {ECO:0000313|EMBL:AID33934.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_944_curated_28
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21871..24990
DNA (3120bp) protein (1040aa)
LuxR family transcriptional regulator n=1 Tax=Hoeflea sp. 108 RepID=UPI000369A327
LuxR family transcriptional regulator {ECO:0000313|EMBL:ESZ00531.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
double-strand break repair protein AddB
SCNpilot_expt_1000_bf_scaffold_944_curated_29
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24987..28508
DNA (3522bp) protein (1174aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
DNA helicase/exodeoxyribonuclease V subunit A n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BWL0_9RHIZ
DNA helicase/exodeoxyribonuclease V subunit A
SCNpilot_expt_1000_bf_scaffold_944_curated_30
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28579..28902
DNA (324bp) protein (108aa)
Thioredoxin n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BWK9_9RHIZ
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
thioredoxin; K03671 thioredoxin 1
Displaying items 1-30 of 49 in total

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