ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1607_curated

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1607_curated_1
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..769)
DNA (768bp) protein (256aa)
malate synthase G; K01638 malate synthase [EC:2.3.3.9]
Malate synthase G {ECO:0000255|HAMAP-Rule:MF_00641}; EC=2.3.3.9 {ECO:0000255|HAMAP-Rule:MF_00641};; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
Malate synthase G n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=MASZ_RHILW
SCNpilot_expt_1000_bf_scaffold_1607_curated_2
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

951..1244
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CG59_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKB77025.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1607_curated_3
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1232..2578)
DNA (1347bp) protein (449aa)
Hydantoinase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FK90_9RHIZ
Hydantoinase {ECO:0000313|EMBL:CDX37633.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Hydantoinase/oxoprolinase
SCNpilot_expt_1000_bf_scaffold_1607_curated_4
unknown

Not on your lists

comp(3301..3786)
DNA (486bp) protein (162aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1607_curated_5

Not on your lists

comp(4455..4835)
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003820992
Uncharacterized protein {ECO:0000313|EMBL:AIA12930.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein; K09946 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1607_curated_6
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5925..6359)
DNA (435bp) protein (145aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160054}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160046};; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
dtd; D-tyrosyl-tRNA(Tyr) deacylase (EC:3.1.-.-); K07560 D-tyrosyl-tRNA(Tyr) deacylase [EC:3.1.-.-]
D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJY9_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1607_curated_7
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6644..7117)
DNA (474bp) protein (158aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
Elongation factor 4 n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJZ3_9RHIZ
lepA; GTP-binding protein LepA; K03596 GTP-binding protein LepA
SCNpilot_expt_1000_bf_scaffold_1607_curated_8
RIFOXYA1_FULL_Brevundimonas_67_7_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7348..7677
DNA (330bp) protein (110aa)
Tax=RIFOXYA1_FULL_Brevundimonas_67_7_curated
SCNpilot_expt_1000_bf_scaffold_1607_curated_9
RIFOXYA1_FULL_Brevundimonas_67_7_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7864..8100
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Listeria monocytogenes RepID=UPI0001695FBB
Tax=RIFOXYA1_FULL_Brevundimonas_67_7_curated
SCNpilot_expt_1000_bf_scaffold_1607_curated_10
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8611..9954)
DNA (1344bp) protein (448aa)
manganese transporter n=1 Tax=Hoeflea sp. 108 RepID=UPI00037C8ACF
Divalent metal cation transporter MntH {ECO:0000256|HAMAP-Rule:MF_00221}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
manganese transport protein MntH; K03322 manganese transport protein
SCNpilot_expt_1000_bf_scaffold_1607_curated_11
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10413..10724
DNA (312bp) protein (104aa)
UPI0003CE9E4B related cluster n=1 Tax=unknown RepID=UPI0003CE9E4B
DNA methyltransferase {ECO:0000313|EMBL:ESW92819.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1607_curated_12
Kitasatospora setae, Kitasatospora, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10823..11683
DNA (861bp) protein (287aa)
S-adenosyl-L-methionine-dependent methyltransferase {ECO:0000256|RuleBase:RU362030}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362030};; TaxID=452652 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Kitasatospora.;" source="Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC; A-0304 / NBRC 14216 / KM-6054) (Streptomyces setae).;"
Uncharacterized protein n=1 Tax=Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC A-0304 / NBRC 14216 / KM-6054) RepID=E4N6T7_KITSK
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1607_curated_13
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11847..13112
DNA (1266bp) protein (422aa)
Imelysin n=1 Tax=Nitratireductor indicus C115 RepID=K2PKY6_9RHIZ
Imelysin {ECO:0000313|EMBL:EKF41797.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
imelysin; K07231 putative iron-regulated protein
SCNpilot_expt_1000_bf_scaffold_1607_curated_14
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13449..14951
DNA (1503bp) protein (501aa)
Uncharacterized protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BQH3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM71825.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1607_curated_15
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14948..16021
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2MZM5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF40688.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein; K07338 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1607_curated_16
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16113..17135
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BZG1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM74963.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
hypothetical protein; K09947 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1607_curated_17
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17248..18231)
DNA (984bp) protein (328aa)
Rubrerythrin n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HK63_9RHIZ
Membrane protein {ECO:0000313|EMBL:EXL02573.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1607_curated_18
Mesorhizobium sp. L2C054A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18459..18794
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E6B2D7
Uncharacterized protein {ECO:0000313|EMBL:ESZ46034.1}; TaxID=1287100 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C054A000.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1607_curated_19
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18867..19418
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000379AB95
Uncharacterized protein {ECO:0000313|EMBL:EKF19231.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1607_curated_20
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19415..19678
DNA (264bp) protein (88aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HK55_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK58870.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1607_curated_21
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19642..20448)
DNA (807bp) protein (269aa)
LytR/AlgR family transcriptional regulator n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA63_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB08005.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
LytR/AlgR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1607_curated_22
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20575..21090
DNA (516bp) protein (172aa)
Mlr2123 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98J36_RHILO
Uncharacterized protein {ECO:0000313|EMBL:KKB08004.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1607_curated_23
unknown

Not on your lists

21519..21725
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1607_curated_24
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21780..22385
DNA (606bp) protein (202aa)
Transposase, IS481 family n=2 Tax=Bordetella pertussis 2371640 RepID=V8UVK4_BORBO
Uncharacterized protein {ECO:0000313|EMBL:CEG09269.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_expt_1000_bf_scaffold_1607_curated_25
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22933..23190)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F2A4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV10303.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
helix-turn-helix domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1607_curated_26
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23277..23615)
DNA (339bp) protein (113aa)
UPI0003D03940 related cluster n=1 Tax=unknown RepID=UPI0003D03940
Uncharacterized protein {ECO:0000313|EMBL:CDX13885.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1607_curated_27
Eimeria necatrix, Eimeria, Eucoccidiorida, Coccidia, Apicomplexa, Eukaryota

Not on your lists

comp(23744..24316)
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Eimeria necatrix RepID=U6N4Q0_9EIME
Uncharacterized protein {ECO:0000313|EMBL:CDJ68915.1}; TaxID=51315 species="Eukaryota; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Eimeriidae; Eimeria.;" source="Eimeria necatrix.;"
GK24884 gene product from transcript GK24884-RA
SCNpilot_expt_1000_bf_scaffold_1607_curated_28
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24550..25062
DNA (513bp) protein (171aa)
cytochrome bd ubiquinol oxidase subunit I; K00425 cytochrome d ubiquinol oxidase subunit I [EC:1.10.3.-]
Cytochrome bd ubiquinol oxidase subunit I n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LNA0_9RHIZ
Cytochrome bd ubiquinol oxidase subunit I {ECO:0000313|EMBL:EKF19234.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_expt_1000_bf_scaffold_1607_curated_29
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25147..25653)
DNA (507bp) protein (169aa)
YcfI, putative structural proteins n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HK68_9RHIZ
YcfI, putative structural proteins {ECO:0000313|EMBL:EHK58883.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1607_curated_30
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25992..26147
DNA (156bp) protein (52aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HK69_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK58884.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
Displaying items 1-30 of 38 in total

View Taxonomy