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SCNpilot_expt_1000_bf_scaffold_2073_curated

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2073_curated_1
unknown

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comp(2..121)
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2073_curated_2
unknown

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327..455
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2073_curated_3
bacterium YEK0313, Bacteria

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comp(465..905)
DNA (441bp) protein (147aa)
Transcriptional regulator, MarR family n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IGS2_BEII9
Transcriptional regulator SlyA {ECO:0000313|EMBL:CEJ10318.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2073_curated_4
Phaeobacter gallaeciensis, Phaeobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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982..1527
DNA (546bp) protein (182aa)
Putative cytochrome b561 n=1 Tax=Phaeobacter gallaeciensis (strain 2.10) RepID=I7ERX8_PHAG2
cytochrome b561
Putative cytochrome b561 {ECO:0000313|EMBL:AFO88390.1}; TaxID=383629 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Phaeobacter.;" source="Phaeobacter gallaeciensis (strain 2.10) (Roseobacter gallaeciensis).;"
SCNpilot_expt_1000_bf_scaffold_2073_curated_5
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1613..2356
DNA (744bp) protein (248aa)
PA-phosphatase-like phosphoesterase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LI49_9RHIZ
PA-phosphatase-like phosphoesterase {ECO:0000313|EMBL:EKF17429.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
PA-phosphatase-like phosphoesterase
SCNpilot_expt_1000_bf_scaffold_2073_curated_6
BJP_IG2158_Rhodobacterales_64_37, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2468..2872
DNA (405bp) protein (135aa)
Conserved hypothetical signal peptide protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J6X2_POLGS
signal peptide protein
Tax=BJP_IG2158_Rhodobacterales_64_37
SCNpilot_expt_1000_bf_scaffold_2073_curated_7
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2954..4000
DNA (1047bp) protein (349aa)
ATP-dependent DNA ligase {ECO:0000313|EMBL:EHK55998.1}; EC=6.5.1.1 {ECO:0000313|EMBL:EHK55998.1};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ligC; ATP-dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1]
ATP-dependent DNA ligase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HTM0_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2073_curated_8
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4000..4146
DNA (147bp) protein (49aa)
ATP-dependent DNA ligase clustered with Ku protein, LigD {ECO:0000313|EMBL:ESR23857.1}; EC=6.5.1.1 {ECO:0000313|EMBL:ESR23857.1};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
ATP-dependent DNA ligase clustered with Ku protein, LigD n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4QVT0_9RHIZ
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2073_curated_9
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4161..4523)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A597_STAND
Uncharacterized protein {ECO:0000313|EMBL:KFL31151.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2073_curated_10
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4794..6983
DNA (2190bp) protein (730aa)
Anthranilate synthase {ECO:0000313|EMBL:EHK57513.1}; EC=4.1.3.27 {ECO:0000313|EMBL:EHK57513.1};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
anthranilate synthase; K13503 anthranilate synthase [EC:4.1.3.27]
Anthranilate synthase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HP28_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2073_curated_11
unknown

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comp(7314..7937)
DNA (624bp) protein (208aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2073_curated_12
unknown

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comp(8404..8679)
DNA (276bp) protein (92aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2073_curated_13
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8790..9266
DNA (477bp) protein (159aa)
Membrane protein AbrB (Fragment) n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HP24_9RHIZ
Membrane protein AbrB {ECO:0000313|EMBL:EHK57524.1}; Flags: Fragment;; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
membrane protein AbrB duplication
SCNpilot_expt_1000_bf_scaffold_2073_curated_14
unknown

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9316..9429
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2073_curated_15
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9551..11269
DNA (1719bp) protein (573aa)
2-isopropylmalate synthase; K01649 2-isopropylmalate synthase [EC:2.3.3.13]
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
2-isopropylmalate synthase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TH38_MESCW
SCNpilot_expt_1000_bf_scaffold_2073_curated_16
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11549..12166
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MZG1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF17408.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2073_curated_17
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12176..13099)
DNA (924bp) protein (308aa)
Metallophosphoesterase n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YCE0_MESOW
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:AEH86673.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_2073_curated_18
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13171..13671
DNA (501bp) protein (167aa)
NUDIX hydrolase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HP15_9RHIZ
NUDIX hydrolase {ECO:0000313|EMBL:EHK57543.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
NUDIX hydrolase
SCNpilot_expt_1000_bf_scaffold_2073_curated_19
unknown

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13757..13939
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2073_curated_20
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13960..14946)
DNA (987bp) protein (329aa)
glutathione transferase (EC:2.5.1.18); K07393 putative glutathione S-transferase
Glutathione transferase {ECO:0000313|EMBL:AEH86669.1}; EC=2.5.1.18 {ECO:0000313|EMBL:AEH86669.1};; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
Glutathione transferase n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YCD6_MESOW
SCNpilot_expt_1000_bf_scaffold_2073_curated_21
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15205..15723
DNA (519bp) protein (173aa)
N-acetyltransferase GCN5 n=1 Tax=Nitratireductor indicus C115 RepID=K2PRG3_9RHIZ
N-acetyltransferase GCN5 {ECO:0000313|EMBL:EKF43617.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
N-acetyltransferase GCN5
SCNpilot_expt_1000_bf_scaffold_2073_curated_22
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15720..17336)
DNA (1617bp) protein (539aa)
choline dehydrogenase n=1 Tax=Hoeflea sp. 108 RepID=UPI000360BDCB
Choline dehydrogenase {ECO:0000313|EMBL:ESZ18884.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
glucose-methanol-choline oxidoreductase
SCNpilot_expt_1000_bf_scaffold_2073_curated_23
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17473..17865
DNA (393bp) protein (131aa)
thioesterase superfamily protein; K10806 acyl-CoA thioesterase YciA [EC:3.1.2.-]
Acyl-CoA hydrolase n=5 Tax=Mesorhizobium RepID=V7EZ56_9RHIZ
Putative hydrolase {ECO:0000313|EMBL:CDX44142.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
SCNpilot_expt_1000_bf_scaffold_2073_curated_24
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17866..18255)
DNA (390bp) protein (130aa)
UPI0003CEA60C related cluster n=1 Tax=unknown RepID=UPI0003CEA60C
HxlR family transcriptional regulator {ECO:0000313|EMBL:ESW81532.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
HxlR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2073_curated_25
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18342..18938
DNA (597bp) protein (199aa)
PREDICTED: NAD(P)H-dependent FMN reductase C4B3.06c-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1638A
FMN reductase {ECO:0000313|EMBL:ESW81531.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
reductase
SCNpilot_expt_1000_bf_scaffold_2073_curated_26
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19238..20176)
DNA (939bp) protein (313aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HPE3_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK57415.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
Displaying 26 items

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