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SCNpilot_expt_1000_bf_scaffold_2396_curated

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2396_curated_1

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3..503
DNA (501bp) protein (167aa)
Metal-dependent amidase/aminoacylase/carboxypeptidase n=1 Tax=uncultured bacterium HF130_12L15 RepID=E0XPM5_9BACT
Metal-dependent amidase/aminoacylase/carboxypeptidase {ECO:0000313|EMBL:ADI16366.1}; TaxID=710815 species="Bacteria; environmental samples.;" source="uncultured bacterium HF130_12L15.;"
amidohydrolase
SCNpilot_expt_1000_bf_scaffold_2396_curated_2
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(509..913)
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002EC847C
Pilus biogenesis protein {ECO:0000313|EMBL:EWY38715.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
PilT protein domain-containing protein
SCNpilot_expt_1000_bf_scaffold_2396_curated_3
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(910..1140)
DNA (231bp) protein (77aa)
AbrB family transcriptional regulator n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A15532
AbrB family transcriptional regulator {ECO:0000313|EMBL:EWY38716.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
transcriptional regulator/antitoxin MazE; K07172 antitoxin
SCNpilot_expt_1000_bf_scaffold_2396_curated_4
Mesorhizobium sp. LNJC394B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1199..2452)
DNA (1254bp) protein (418aa)
ABC transporter n=1 Tax=Mesorhizobium sp. LNJC394B00 RepID=V7G4G1_9RHIZ
ABC transporter {ECO:0000313|EMBL:ESY21346.1}; TaxID=1287274 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC394B00.;"
ABC transporter ATP-binding protein; K06147 ATP-binding cassette, subfamily B, bacterial rbh
SCNpilot_expt_1000_bf_scaffold_2396_curated_5
unknown

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2752..2907
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2396_curated_6
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3182..3403
DNA (222bp) protein (74aa)
50S ribosomal protein L31 n=2 Tax=Bartonella tamiae RepID=J0QZZ3_9RHIZ
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
rpmE; 50S ribosomal protein L31; K02909 large subunit ribosomal protein L31
SCNpilot_expt_1000_bf_scaffold_2396_curated_7
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(3706..3909)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6I5_9BACT
hypothetical protein
Tax=RBG_16_Nitrospirae_64_22_curated
SCNpilot_expt_1000_bf_scaffold_2396_curated_8
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4028..5437)
DNA (1410bp) protein (470aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
PREDICTED: dihydrolipoyl dehydrogenase 1, mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C14031
dihydrolipoamide dehydrogenase
SCNpilot_expt_1000_bf_scaffold_2396_curated_9
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5901..6653)
DNA (753bp) protein (251aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C4F4_9RHIZ
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EIM76706.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
oxidoreductase rbh
SCNpilot_expt_1000_bf_scaffold_2396_curated_10
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6650..7129)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TIW1_MESCW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV10157.1}; Flags: Precursor;; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_2396_curated_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7188..7475)
DNA (288bp) protein (96aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13DQ2_RHOPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE37787.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_expt_1000_bf_scaffold_2396_curated_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7472..7723)
DNA (252bp) protein (84aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13DQ3_RHOPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE37786.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_expt_1000_bf_scaffold_2396_curated_13
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7727..9019)
DNA (1293bp) protein (431aa)
dihydrolipoamide succinyltransferase; K00658 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; EC=2.3.1.61 {ECO:0000313|EMBL:ABG64770.1};; 2-oxoglutarate dehydrogenase complex component E2 {ECO:0000256|RuleBase:RU361138}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
2-oxoglutarate dehydrogenase E2 component n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11CV5_MESSB
SCNpilot_expt_1000_bf_scaffold_2396_curated_14
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9041..9349)
DNA (309bp) protein (103aa)
Mlr8183 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q983T6_RHILO
Uncharacterized protein {ECO:0000313|EMBL:CDX27427.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2396_curated_15
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9353..12340)
DNA (2988bp) protein (996aa)
2-oxoglutarate dehydrogenase E1 component {ECO:0000313|EMBL:KFB08776.1}; EC=1.2.4.2 {ECO:0000313|EMBL:KFB08776.1};; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
sucA; 2-oxoglutarate dehydrogenase E1 component; K00164 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
2-oxoglutarate dehydrogenase E1 component n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11CV6_MESSB
SCNpilot_expt_1000_bf_scaffold_2396_curated_16
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12510..13421)
DNA (912bp) protein (304aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
succinyl-CoA synthetase subsunit alpha n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F7D170
succinyl-CoA synthetase, alpha subunit
SCNpilot_expt_1000_bf_scaffold_2396_curated_17
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13427..14203)
DNA (777bp) protein (259aa)
Succinyl-CoA synthetase (ADP-forming) beta subunit {ECO:0000313|EMBL:AKI03071.1}; EC=6.2.1.5 {ECO:0000313|EMBL:AKI03071.1};; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
succinyl-CoA synthetase subunit beta (EC:6.2.1.5); K01903 succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
malate--CoA ligase subunit beta n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002EB7DF9
SCNpilot_expt_1000_bf_scaffold_2396_curated_18
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14623..15588)
DNA (966bp) protein (322aa)
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904};; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
malate dehydrogenase, NAD-dependent; K00024 malate dehydrogenase [EC:1.1.1.37]
malate dehydrogenase n=1 Tax=Hoeflea sp. 108 RepID=UPI0003682081
SCNpilot_expt_1000_bf_scaffold_2396_curated_19
Sagittula stellata, Sagittula, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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15911..17329
DNA (1419bp) protein (473aa)
cls; cardiolipin synthetase Cls (EC:2.7.8.-); K06131 cardiolipin synthase [EC:2.7.8.-]
Probable cardiolipin synthase n=1 Tax=Sagittula stellata E-37 RepID=A3JYZ3_9RHOB
Probable cardiolipin synthase {ECO:0000313|EMBL:EBA09696.1}; TaxID=388399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sagittula.;" source="Sagittula stellata E-37.;"
SCNpilot_expt_1000_bf_scaffold_2396_curated_20
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17321..18481)
DNA (1161bp) protein (387aa)
AFG1 family ATPase n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C4E9_9RHIZ
AFG1 family ATPase {ECO:0000313|EMBL:EIM76701.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
AFG1-like ATPase; K06916
SCNpilot_expt_1000_bf_scaffold_2396_curated_21
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18693..19235)
DNA (543bp) protein (181aa)
Outer membrane lipoprotein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YB11_9RHIZ
Outer membrane lipoprotein omp19 {ECO:0000256|PIRNR:PIRNR034005}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
outer membrane lipoprotein
SCNpilot_expt_1000_bf_scaffold_2396_curated_22
Mesorhizobium sp. L103C119B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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19553..20800
DNA (1248bp) protein (416aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.1 {ECO:0000256|SAAS:SAAS00088795};; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=1287085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C119B0.;"
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1]
UPI0003CED32C related cluster n=1 Tax=unknown RepID=UPI0003CED32C
SCNpilot_expt_1000_bf_scaffold_2396_curated_23
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20831..21367)
DNA (537bp) protein (179aa)
Oxidoreductase domain-containing protein n=1 Tax=Celeribacter baekdonensis B30 RepID=K2IEA3_9RHOB
Oxidoreductase domain-containing protein {ECO:0000313|EMBL:AJE44866.1}; TaxID=1208324 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter indicus.;"
oxidoreductase
SCNpilot_expt_1000_bf_scaffold_2396_curated_24
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(22092..24590)
DNA (2499bp) protein (833aa)
Hybrid sensory histidine kinase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N3X8_9RHIZ
Hybrid sensory histidine kinase {ECO:0000313|EMBL:EKF18973.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_2396_curated_25
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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25683..26429
DNA (747bp) protein (249aa)
Monofunctional biosynthetic peptidoglycan transglycosylase {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055690}; Short=Monofunctional TGase {ECO:0000256|HAMAP-Rule:MF_00766};; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055699};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
mtgA; monofunctional biosynthetic peptidoglycan transglycosylase; K03814 monofunctional biosynthetic peptidoglycan transglycosylase [EC:2.4.1.-]
peptidoglycan transglycosylase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00037601A5
SCNpilot_expt_1000_bf_scaffold_2396_curated_26
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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26731..26913
DNA (183bp) protein (61aa)
50S ribosomal protein L32 n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EJL2_9RHIZ
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
rpmF; 50S ribosomal protein L32; K02911 large subunit ribosomal protein L32
SCNpilot_expt_1000_bf_scaffold_2396_curated_27
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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27046..27444
DNA (399bp) protein (133aa)
Membrane protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FGW9_9RHIZ
Membrane protein {ECO:0000313|EMBL:ESX68779.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2396_curated_28
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(27477..28091)
DNA (615bp) protein (205aa)
polyhydroxyalkanoate synthesis repressor PhaR n=1 Tax=Hoeflea sp. 108 RepID=UPI000381A86C
polyhydroxyalkonate synthesis repressor, PhaR
Polyhydroxyalkanoate synthesis repressor PhaR {ECO:0000313|EMBL:ESY90059.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
SCNpilot_expt_1000_bf_scaffold_2396_curated_29
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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28351..28674
DNA (324bp) protein (108aa)
Acetyl-CoA acetyltransferase with thiolase domain (Acetoacetyl-CoA thiolase) {ECO:0000313|EMBL:CCV04863.1}; EC=2.3.1.9 {ECO:0000313|EMBL:CCV04863.1};; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
Acetyl-CoA acetyltransferase with thiolase domain (Acetoacetyl-CoA thiolase) n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EL29_9RHIZ
Displaying 29 items

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