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SCNpilot_expt_1000_bf_scaffold_764_curated

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_764_curated_1
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3..1571
DNA (1569bp) protein (523aa)
PKD domain containing protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PAH2_CHIPD
PKD domain containing protein {ECO:0000313|EMBL:ACU61176.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
PKD domain-containing protein
SCNpilot_expt_1000_bf_scaffold_764_curated_2
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1574..2167)
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI00036E7070
HAD-superfamily hydrolase
HAD-superfamily subfamily IB hydrolase, TIGR01490 {ECO:0000313|EMBL:ACU61509.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_764_curated_3
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2164..2895)
DNA (732bp) protein (244aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PE10_CHIPD
short chain dehydrogenase
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACU61510.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_764_curated_4
candidate division TM7 genomosp. GTL1, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(2904..3788)
DNA (885bp) protein (295aa)
UbiA prenyltransferase n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KSJ0_9BACT
UbiA prenyltransferase {ECO:0000313|EMBL:EDK72595.1}; TaxID=443342 species="Bacteria; Candidatus Saccharibacteria.;" source="candidate division TM7 genomosp. GTL1.;"
UbiA prenyltransferase
SCNpilot_expt_1000_bf_scaffold_764_curated_5
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3992..5608
DNA (1617bp) protein (539aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PE13_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU61513.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_764_curated_6
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5941..6612
DNA (672bp) protein (224aa)
LuxR family transcriptional regulator n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TLL6_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC93210.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
LuxR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_764_curated_7
unknown

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comp(7325..8383)
DNA (1059bp) protein (353aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_764_curated_8
unknown

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comp(8355..8711)
DNA (357bp) protein (119aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_764_curated_9
unknown

Not on your lists

comp(8922..9341)
DNA (420bp) protein (140aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_764_curated_10
RBG_16_Spirochaetes_49_21_curated, Spirochaetes, Bacteria

Not on your lists

comp(9341..10423)
DNA (1083bp) protein (361aa)
Cro/Cl family transcriptional regulator n=1 Tax=Segetibacter koreensis RepID=UPI00037B52F2
hypothetical protein
Tax=RBG_16_Spirochaetes_49_21_curated
SCNpilot_expt_1000_bf_scaffold_764_curated_11
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

10663..12030
DNA (1368bp) protein (456aa)
Uncharacterized protein n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0G5U4_ECHVK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA80668.1}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
SCNpilot_expt_1000_bf_scaffold_764_curated_12
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12048..13586)
DNA (1539bp) protein (513aa)
Resolvase domain protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PJG5_CHIPD
resolvase domain-containing protein
Resolvase domain protein {ECO:0000313|EMBL:ACU63725.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_764_curated_13
unknown

Not on your lists

comp(13573..13764)
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_764_curated_14
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14550..15011
DNA (462bp) protein (154aa)
Transposase, IS66 family, Orf3 id=1982671 bin=GWE2_Bacteroidetes_42_39 species=Psychroflexus torquis genus=Psychroflexus taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_39 organism_group=Bacteroidetes organism_desc=Good +
transposase
Tax=GWE2_Bacteroidetes_42_39_curated
SCNpilot_expt_1000_bf_scaffold_764_curated_15
Galbibacter marinus, Galbibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

15024..15302
DNA (279bp) protein (93aa)
Transposase (Fragment) n=1 Tax=Galbibacter marinus RepID=K2PZ04_9FLAO
Transposase {ECO:0000313|EMBL:EKF53811.1}; Flags: Fragment;; TaxID=555500 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Galbibacter.;" source="Galbibacter marinus.;"
transposase
SCNpilot_expt_1000_bf_scaffold_764_curated_16
BJP_08E140C01_Flavobacteriales_35_8, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

15257..15883
DNA (627bp) protein (209aa)
transposase n=1 Tax=Myroides injenensis RepID=UPI000289F2C1
transposase
Tax=BJP_08E140C01_Flavobacteriales_35_8
SCNpilot_expt_1000_bf_scaffold_764_curated_17
unknown

Not on your lists

15896..16144
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_764_curated_18
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16975..18054)
DNA (1080bp) protein (360aa)
hypothetical protein n=1 Tax=Riemerella columbina RepID=UPI0003638C47
Uncharacterized protein {ECO:0000313|EMBL:EKN11851.1}; TaxID=999418 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii CL02T12C30.;"
DNA polymerase, beta-like region
SCNpilot_expt_1000_bf_scaffold_764_curated_19
Elizabethkingia sp. BM10, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18058..18918)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7VNV6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AJW62962.1}; TaxID=722877 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia sp. BM10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_764_curated_20
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(18915..19805)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7VM79_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EPR71056.1}; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-11B.;"
AAA ATPase central domain-containing protein
SCNpilot_expt_1000_bf_scaffold_764_curated_21
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19812..20324)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IJV1_FLUTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA45010.1}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
SCNpilot_expt_1000_bf_scaffold_764_curated_22
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(20327..21301)
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7WW96_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EPR71054.1}; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-11B.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_764_curated_23
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21328..21561)
DNA (234bp) protein (78aa)
Uncharacterized protein conserved in bacteria (DUF2188) n=2 Tax=Thermoanaerobacter RepID=M8DFI6_THETY
Uncharacterised protein {ECO:0000313|EMBL:CEQ21607.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_764_curated_24
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

Not on your lists

comp(21997..23004)
DNA (1008bp) protein (336aa)
Helix-turn-helix domain protein n=1 Tax=Chlorobium phaeobacteroides (strain DSM 266) RepID=A1BCL4_CHLPD
helix-turn-helix domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
SCNpilot_expt_1000_bf_scaffold_764_curated_25
Pelodictyon phaeoclathratiforme, Pelodictyon, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(23008..23358)
DNA (351bp) protein (117aa)
Putative uncharacterized protein n=1 Tax=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) RepID=B4SAP6_PELPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACF42415.1}; TaxID=324925 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Pelodictyon.;" source="Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1).;"
SCNpilot_expt_1000_bf_scaffold_764_curated_26
Bacteroides salyersiae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23471..25201)
DNA (1731bp) protein (577aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=Q64YP4_BACFR
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:EIY69801.1}; TaxID=997887 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides salyersiae CL02T12C01.;"
SCNpilot_expt_1000_bf_scaffold_764_curated_27
unknown

Not on your lists

comp(25396..25677)
DNA (282bp) protein (94aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_764_curated_28
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25931..27229
DNA (1299bp) protein (433aa)
Isopenicillin-N epimerase n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L7E5_HALH1
Isopenicillin N epimerase homolog {ECO:0000313|EMBL:GAO41203.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
Isopenicillin-N epimerase
SCNpilot_expt_1000_bf_scaffold_764_curated_29
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

27480..29945
DNA (2466bp) protein (822aa)
TonB-dependent receptor n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GGT6_9BACT
TonB-dependent receptor {ECO:0000313|EMBL:CCH53111.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
TonB-dependent receptor
SCNpilot_expt_1000_bf_scaffold_764_curated_30
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(30185..30799)
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-M04 RepID=UPI00036F8016
hypothetical protein
Tax=RBG_16_Planctomycetes_64_10_curated
Displaying 30 items

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