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SCNpilot_expt_1000_bf_scaffold_285_curated

Search features with annotation key words

Displaying items 1-30 of 108 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_285_curated_1
unknown

Not on your lists

comp(245..529)
DNA (285bp) protein (95aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_285_curated_2
unknown

Not on your lists

comp(659..778)
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_285_curated_3
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1147..1941)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJB2_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV98645.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_285_curated_4
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2064..3188
DNA (1125bp) protein (375aa)
ABC-2 type transporter n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PD45_CHIPD
ABC transporter; K09686 antibiotic transport system permease protein
ABC-2 type transporter {ECO:0000313|EMBL:ACU63259.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_285_curated_5
unknown

Not on your lists

3621..3863
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_285_curated_6
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3969..4271)
DNA (303bp) protein (101aa)
Uncharacterized protein {ECO:0000313|EMBL:KIC94866.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
SCNpilot_expt_1000_bf_scaffold_285_curated_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4395..5468)
DNA (1074bp) protein (358aa)
beta-ketoacyl-ACP synthase; K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
Beta-ketoacyl-acyl-carrier-protein synthase I n=1 Tax=Niabella soli DSM 19437 RepID=H1NM52_9SPHI
3-oxoacyl-ACP synthase {ECO:0000313|EMBL:AHF14734.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_285_curated_8
unknown

Not on your lists

comp(5546..6403)
DNA (858bp) protein (286aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_285_curated_9
Hymenobacter swuensis, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(6403..7584)
DNA (1182bp) protein (394aa)
hypothetical protein n=1 Tax=Hymenobacter aerophilus RepID=UPI0003707413
Uncharacterized protein {ECO:0000313|EMBL:AHJ95781.1}; TaxID=1227739 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter swuensis DY53.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_285_curated_10
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7897..8472
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFM1_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:GAO41919.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_285_curated_11
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9473..9772
DNA (300bp) protein (100aa)
RNP-1 like RNA-binding protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TG92_NIAKG
RNP-1 like RNA-binding protein
RNP-1 like RNA-binding protein {ECO:0000313|EMBL:AEW02731.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_285_curated_12
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9828..10085
DNA (258bp) protein (86aa)
Putative short-chain dehydrogenase n=1 Tax=Niabella soli DSM 19437 RepID=H1NJC7_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17108.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_285_curated_13
unknown

Not on your lists

comp(10632..10760)
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_285_curated_14
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10757..10939)
DNA (183bp) protein (61aa)
4-hydroxyphenylpyruvate dioxygenase; K00457 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
4-hydroxyphenylpyruvate dioxygenase {ECO:0000313|EMBL:ACU62849.1}; EC=1.13.11.27 {ECO:0000313|EMBL:ACU62849.1};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUU0_CHIPD
SCNpilot_expt_1000_bf_scaffold_285_curated_15
Cytophaga hutchinsonii, Cytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

11624..12016
DNA (393bp) protein (131aa)
Membrane spanning protein, required for outer membrane integrity n=1 Tax=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) RepID=Q11VD2_CYTH3
tolA; outer membrane integrity protein
Membrane spanning protein, required for outer membrane integrity {ECO:0000313|EMBL:ABG58634.1}; TaxID=269798 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Cytophaga.;" source="Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469).;"
SCNpilot_expt_1000_bf_scaffold_285_curated_16
Prevotella oralis, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12888..15965
DNA (3078bp) protein (1026aa)
Uncharacterized protein n=1 Tax=Prevotella oralis CC98A RepID=V8BTY2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ETD18569.1}; TaxID=1073367 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella oralis CC98A.;"
TonB-linked outer membrane protein, SusC/RagA family
SCNpilot_expt_1000_bf_scaffold_285_curated_17
Prevotella buccalis, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15995..17776
DNA (1782bp) protein (594aa)
hypothetical protein n=1 Tax=Prevotella maculosa RepID=UPI000382D9CB
Uncharacterized protein {ECO:0000313|EMBL:KGF34994.1}; TaxID=1401074 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella buccalis DNF00853.;"
RagB/SusD family protein
SCNpilot_expt_1000_bf_scaffold_285_curated_18
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17832..17924)
DNA (93bp) protein (31aa)
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI0002EC4879
Uncharacterized protein {ECO:0000313|EMBL:GAO43091.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
SCNpilot_expt_1000_bf_scaffold_285_curated_19
unknown

Not on your lists

18004..19203
DNA (1200bp) protein (400aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_285_curated_20
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19196..20488
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BZT2_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:GAO43092.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_285_curated_21
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20499..22280
DNA (1782bp) protein (594aa)
Uncharacterized protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G1W8_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDE19992.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_285_curated_22
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22307..23338)
DNA (1032bp) protein (344aa)
Regulatory protein GntR HTH n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XV64_PEDHD
Putative GntR family transcriptional regulator {ECO:0000313|EMBL:GAO43094.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_285_curated_23
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23462..24841
DNA (1380bp) protein (460aa)
class II aldolase/adducin family protein; K01628 L-fuculose-phosphate aldolase [EC:4.1.2.17]
Class II aldolase/adducin family protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y983_9SPHI
Class II aldolase/adducin family protein {ECO:0000313|EMBL:EHQ29461.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
SCNpilot_expt_1000_bf_scaffold_285_curated_24
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24888..25859
DNA (972bp) protein (324aa)
Xylose isomerase {ECO:0000256|RuleBase:RU000609, ECO:0000256|SAAS:SAAS00108511}; EC=5.3.1.5 {ECO:0000256|RuleBase:RU000609, ECO:0000256|SAAS:SAAS00108511};; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
Xylose isomerase domain-containing protein TIM barrel; K01805 xylose isomerase [EC:5.3.1.5]
hypothetical protein n=1 Tax=Alistipes sp. AP11 RepID=UPI00030C3204
SCNpilot_expt_1000_bf_scaffold_285_curated_25
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25892..28606
DNA (2715bp) protein (905aa)
alpha-L-rhamnosidase; K05989 alpha-L-rhamnosidase [EC:3.2.1.40]
hypothetical protein n=1 Tax=Prevotella oris RepID=UPI000380EF86
Putative glycosidase {ECO:0000313|EMBL:GAO43097.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
SCNpilot_expt_1000_bf_scaffold_285_curated_26
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

28611..30380
DNA (1770bp) protein (590aa)
hypothetical protein n=1 Tax=Prevotella oris RepID=UPI00035C864D
Uncharacterized protein {ECO:0000313|EMBL:GAO43093.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_285_curated_27
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

30384..33188
DNA (2805bp) protein (935aa)
alpha-L-rhamnosidase; K05989 alpha-L-rhamnosidase [EC:3.2.1.40]
Alpha-L-rhamnosidase-like protein Glycoside hydrolase family 78 n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FCI1_FLAJ1
Putative glycosidase {ECO:0000313|EMBL:GAO43098.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
SCNpilot_expt_1000_bf_scaffold_285_curated_28
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

33196..34278
DNA (1083bp) protein (361aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037D7CA7
L-rhamnose/proton symporter {ECO:0000313|EMBL:GAO43099.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
RhaT l-rhamnose-proton symport 2
SCNpilot_expt_1000_bf_scaffold_285_curated_29
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

34302..35672
DNA (1371bp) protein (457aa)
Carbohydrate kinase, FGGY n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EC73_RUNSL
Putative sugar kinase {ECO:0000313|EMBL:GAO43100.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
carbohydrate kinase, FGGY
SCNpilot_expt_1000_bf_scaffold_285_curated_30
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

35872..37986
DNA (2115bp) protein (705aa)
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase {ECO:0000313|EMBL:AEV99958.1}; EC=1.1.1.100 {ECO:0000313|EMBL:AEV99958.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPW4_NIAKG
rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
Displaying items 1-30 of 108 in total

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