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SCNpilot_expt_1000_bf_scaffold_30_curated

Search features with annotation key words

Displaying items 1-30 of 231 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_30_curated_1
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

284..883
DNA (600bp) protein (200aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Superoxide dismutase; K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
Superoxide dismutase n=1 Tax=Niabella soli DSM 19437 RepID=H1NQ05_9SPHI
SCNpilot_expt_1000_bf_scaffold_30_curated_2
Flavobacterium enshiense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(983..1825)
DNA (843bp) protein (281aa)
MscS Mechanosensitive ion channel n=1 Tax=Niabella soli DSM 19437 RepID=H1NKW8_9SPHI
Mechanosensitive ion channel protein {ECO:0000313|EMBL:KGO97069.1}; TaxID=1107311 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium enshiense DK69.;"
small-conductance mechanosensitive channel; K03442 small conductance mechanosensitive channel
SCNpilot_expt_1000_bf_scaffold_30_curated_3
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1984..2739)
DNA (756bp) protein (252aa)
3-oxoacyl-(acyl-carrier-protein) reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:AEW02306.1}; EC=1.1.1.100 {ECO:0000313|EMBL:AEW02306.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8U9_NIAKG
SCNpilot_expt_1000_bf_scaffold_30_curated_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2796..3746)
DNA (951bp) protein (317aa)
Phytanoyl-CoA dioxygenase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THU7_NIAKG
Phytanoyl-CoA dioxygenase
Phytanoyl-CoA dioxygenase {ECO:0000313|EMBL:AEV98542.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_30_curated_5
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3748..5256)
DNA (1509bp) protein (503aa)
GH3 auxin-responsive promoter n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8V0_NIAKG
GH3 auxin-responsive promoter
GH3 auxin-responsive promoter {ECO:0000313|EMBL:AEW02307.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_30_curated_6
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5446..6243)
DNA (798bp) protein (266aa)
sulfate-transporting ATPase; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-]
Sulfate-transporting ATPase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8V1_NIAKG
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAO42052.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
SCNpilot_expt_1000_bf_scaffold_30_curated_7
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6367..7320
DNA (954bp) protein (318aa)
5,10-methylenetetrahydrofolate reductase (NAD(P)); K00297 methylenetetrahydrofolate reductase (NADPH) [EC:1.5.1.20]
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Methylenetetrahydrofolate reductase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8V2_NIAKG
SCNpilot_expt_1000_bf_scaffold_30_curated_8
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

7342..8343
DNA (1002bp) protein (334aa)
hypothetical protein VspiD_28515 id=4436996 bin=GWF2_Lentisphaerae_49_21 species=Verrucomicrobium spinosum genus=Verrucomicrobium taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
hypothetical protein
Tax=GWF2_Lentisphaerae_49_21_curated
SCNpilot_expt_1000_bf_scaffold_30_curated_9
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(8367..10523)
DNA (2157bp) protein (719aa)
Planctomycete cytochrome C n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VW67_DYAFD
cytochrome C
Planctomycete cytochrome C {ECO:0000313|EMBL:ACT93199.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_expt_1000_bf_scaffold_30_curated_10
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(10540..11994)
DNA (1455bp) protein (485aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VW68_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT93200.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_expt_1000_bf_scaffold_30_curated_11
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(12031..14355)
DNA (2325bp) protein (775aa)
Uncharacterized protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QIZ6_SPILD
Uncharacterized protein {ECO:0000313|EMBL:ADB37010.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_30_curated_12
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14542..15813)
DNA (1272bp) protein (424aa)
Putative uncharacterized protein id=3355116 bin=GWF2_Bacteroidetes_41_9 species=Cyclobacterium marinum genus=Cyclobacterium taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_9 organism_group=Bacteroidetes
hypothetical protein
Tax=GWA2_Bacteroidetes_40_15_curated
SCNpilot_expt_1000_bf_scaffold_30_curated_13
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15979..16434
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI000363D886
Uncharacterized protein {ECO:0000313|EMBL:GAO43532.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_30_curated_14
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16712..17038
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L3I8_HALH1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEE52965.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
SCNpilot_expt_1000_bf_scaffold_30_curated_15
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17096..18100)
DNA (1005bp) protein (335aa)
Fructose-1,6-bisphosphatase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; Short=FBPase class 1 {ECO:0000256|HAMAP-Rule:MF_01855};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01855, ECO:0000256|SAAS:SAAS00181223};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
D-fructose 1,6-bisphosphatase; K03841 fructose-1,6-bisphosphatase I [EC:3.1.3.11]
Fructose-1,6-bisphosphatase class 1 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGK5_NIAKG
SCNpilot_expt_1000_bf_scaffold_30_curated_16
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18240..21320)
DNA (3081bp) protein (1027aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037AC5DF
Uncharacterized protein {ECO:0000313|EMBL:ETZ23774.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
glycoside hydrolase family protein
SCNpilot_expt_1000_bf_scaffold_30_curated_17
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(21472..22908)
DNA (1437bp) protein (479aa)
putative L-arabinose isomerase; K01804 L-arabinose isomerase [EC:5.3.1.4]
L-arabinose isomerase {ECO:0000256|SAAS:SAAS00093763}; EC=5.3.1.4 {ECO:0000256|SAAS:SAAS00093763};; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000378C320
SCNpilot_expt_1000_bf_scaffold_30_curated_18
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22942..25713)
DNA (2772bp) protein (924aa)
Alpha-L-rhamnosidase n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YER3_9SPHI
Alpha-L-rhamnosidase {ECO:0000313|EMBL:EHQ30823.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
alpha-L-rhamnosidase
SCNpilot_expt_1000_bf_scaffold_30_curated_19
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25824..28961)
DNA (3138bp) protein (1046aa)
Putative uncharacterized protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y047_PEDHD
Uncharacterized protein {ECO:0000313|EMBL:ACU04759.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_30_curated_20
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

29266..30162
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036BAC5A
AraC family transcriptional regulator
AraC protein arabinose-binding/dimerisation {ECO:0000313|EMBL:ACU04635.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_expt_1000_bf_scaffold_30_curated_21
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

30622..33750
DNA (3129bp) protein (1043aa)
TonB-denpendent receptor n=1 Tax=Rudanella lutea RepID=UPI00035C0DE1
TonB-dependent receptor plug {ECO:0000313|EMBL:AEI51835.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
TonB-dependent receptor plug
SCNpilot_expt_1000_bf_scaffold_30_curated_22
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

33762..35270
DNA (1509bp) protein (503aa)
RagB/SusD domain-containing protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EBT8_RUNSL
RagB/SusD domain-containing protein
RagB/SusD domain-containing protein {ECO:0000313|EMBL:AEI51834.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
SCNpilot_expt_1000_bf_scaffold_30_curated_23
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(35850..38294)
DNA (2445bp) protein (815aa)
MscS Mechanosensitive ion channel n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFM3_NIAKG
mechanosensitive ion channel MscS
MscS Mechanosensitive ion channel {ECO:0000313|EMBL:AEV99462.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_30_curated_24
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

comp(38647..39591)
DNA (945bp) protein (315aa)
Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GC34_9BACT
monosaccharide-transporting ATPase; K10439 ribose transport system substrate-binding protein
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
SCNpilot_expt_1000_bf_scaffold_30_curated_25
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

comp(39941..40873)
DNA (933bp) protein (311aa)
Inner-membrane translocator n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QJX7_SPILD
inner-membrane translocator; K10440 ribose transport system permease protein
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
SCNpilot_expt_1000_bf_scaffold_30_curated_26
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(40971..42458)
DNA (1488bp) protein (496aa)
Ribose import ATP-binding protein RbsA {ECO:0000256|HAMAP-Rule:MF_01716}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01716};; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
ABC transporter; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
ABC transporter related protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GC32_9BACT
SCNpilot_expt_1000_bf_scaffold_30_curated_27
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(42853..43782)
DNA (930bp) protein (310aa)
Xylose isomerase domain protein TIM barrel n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VRJ5_DYAFD
xylose isomerase domain-containing protein
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:ACT92698.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_expt_1000_bf_scaffold_30_curated_28
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(43787..45055)
DNA (1269bp) protein (423aa)
Putative uncharacterized protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XTT3_PEDHD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU03719.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_expt_1000_bf_scaffold_30_curated_29
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(45741..46712)
DNA (972bp) protein (324aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KM53_CLOPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX41396.1}; Flags: Precursor;; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
SCNpilot_expt_1000_bf_scaffold_30_curated_30
Coraliomargarita sp. CAG:312, Coraliomargarita, Puniceicoccales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(46923..47897)
DNA (975bp) protein (325aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037178AC
Uncharacterized protein {ECO:0000313|EMBL:CDE85639.1}; TaxID=1262865 species="Bacteria; Verrucomicrobia; Opitutae; Puniceicoccales; Puniceicoccaceae; Coraliomargarita; environmental samples.;" source="Coraliomargarita sp. CAG:312.;"
hypothetical protein
Displaying items 1-30 of 231 in total

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