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SCNpilot_expt_1000_bf_scaffold_1134_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1134_curated_1
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(251..1621)
DNA (1371bp) protein (457aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
PpiC-type peptidyl-prolyl cis-trans isomerase; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003788883
SCNpilot_expt_1000_bf_scaffold_1134_curated_2
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1698..4613)
DNA (2916bp) protein (972aa)
Translation initiation factor IF-2 n=1 Tax=Niabella soli DSM 19437 RepID=H1NR38_9SPHI
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
translation initiation factor 2 (bIF-2); K02519 translation initiation factor IF-2
SCNpilot_expt_1000_bf_scaffold_1134_curated_3
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(4721..5968)
DNA (1248bp) protein (416aa)
NusA antitermination factor n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8W7_NIAKG
NusA antitermination factor; K02600 N utilization substance protein A
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_1134_curated_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(6031..6561)
DNA (531bp) protein (177aa)
Ribosome maturation factor RimP n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8W8_NIAKG
Ribosome maturation factor rimP; K09748 ribosome maturation factor RimP
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_1134_curated_5
Helicobacter winghamensis, Helicobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

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comp(6669..7721)
DNA (1053bp) protein (351aa)
WCFX; UDP-glucuronic acid epimerase; K08679 UDP-glucuronate 4-epimerase [EC:5.1.3.6] rbh
NAD dependent epimerase/dehydratase family protein n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XMB6_9HELI
NAD dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:EEO26155.1}; TaxID=556267 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter.;" source="Helicobacter winghamensis ATCC BAA-430.;"
SCNpilot_expt_1000_bf_scaffold_1134_curated_6
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(7857..8924)
DNA (1068bp) protein (356aa)
peptide chain release factor 1 n=1 Tax=Niabella aurantiaca RepID=UPI0003642013
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
peptide chain release factor 1 (bRF-1); K02835 peptide chain release factor 1
SCNpilot_expt_1000_bf_scaffold_1134_curated_7
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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9090..10256
DNA (1167bp) protein (389aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035C9823
Uncharacterized protein {ECO:0000313|EMBL:KIC89676.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
amidohydrolase
SCNpilot_expt_1000_bf_scaffold_1134_curated_8
unknown

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10401..13325
DNA (2925bp) protein (975aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1134_curated_9
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(13328..16174)
DNA (2847bp) protein (949aa)
DNA polymerase I; K02335 DNA polymerase I [EC:2.7.7.7]
DNA polymerase I n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCH4_NIAKG
DNA polymerase I {ECO:0000313|EMBL:KIC91017.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
SCNpilot_expt_1000_bf_scaffold_1134_curated_10
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

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comp(16679..19459)
DNA (2781bp) protein (927aa)
alpha-L-rhamnosidase; K05989 alpha-L-rhamnosidase [EC:3.2.1.40]
Alpha-L-rhamnosidase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNI4_NIAKG
Tax=RBG_16_Planctomycetes_64_12_curated
SCNpilot_expt_1000_bf_scaffold_1134_curated_11
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(19550..19681)
DNA (132bp) protein (44aa)
RagB/SusD domain-containing protein
RagB/SusD domain protein id=3869710 bin=GWC2_Bacteroidetes_46_850 species=Dyadobacter fermentans genus=Dyadobacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
Uncharacterized protein {ECO:0000313|EMBL:ETZ21576.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
Displaying 11 items

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