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SCNpilot_expt_1000_bf_scaffold_137_curated

Search features with annotation key words

Displaying items 1-30 of 227 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_137_curated_1
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(2..1978)
DNA (1977bp) protein (659aa)
PKD domain containing protein n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8K1M5_9BACT
PKD domain containing protein {ECO:0000313|EMBL:ELR73352.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
PKD domain-containing protein
SCNpilot_expt_1000_bf_scaffold_137_curated_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(2388..3239)
DNA (852bp) protein (284aa)
Xylose isomerase domain protein TIM barrel n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPZ0_9BACT
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:EEF58087.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
xylose isomerase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_137_curated_3
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(3248..4423)
DNA (1176bp) protein (392aa)
FG-GAP repeat-containing protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8ELU0_RUNSL
FG-GAP repeat-containing protein
FG-GAP repeat-containing protein {ECO:0000313|EMBL:AEI49496.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
SCNpilot_expt_1000_bf_scaffold_137_curated_4
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(4485..5399)
DNA (915bp) protein (305aa)
Esterase/lipase-like protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EK19_RUNSL
esterase/lipase-like protein
Esterase/lipase-like protein {ECO:0000313|EMBL:AEI49426.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
SCNpilot_expt_1000_bf_scaffold_137_curated_5
Flavobacterium sp. EM1321, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5403..5990)
DNA (588bp) protein (196aa)
Lactate utilization protein B/C n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y0N0_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:KDN55485.1}; TaxID=1492738 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1321.;"
hypothetical protein; K00782 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_137_curated_6
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5994..7370)
DNA (1377bp) protein (459aa)
Lactate utilization protein B/C n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y0N1_9SPHI
Contig23, whole genome shotgun sequence {ECO:0000313|EMBL:KIO78142.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_137_curated_7
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7377..8111)
DNA (735bp) protein (245aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y0N2_9SPHI
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ28772.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
SCNpilot_expt_1000_bf_scaffold_137_curated_8
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8297..9205
DNA (909bp) protein (303aa)
Transglutaminase domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T6T8_NIAKG
transglutaminase domain-containing protein
Transglutaminase domain protein {ECO:0000313|EMBL:AEV97941.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_137_curated_9
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9202..10071)
DNA (870bp) protein (290aa)
Transcription factor jumonji jmjC domain protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PEM4_CHIPD
transcription factor jumonji jmjC domain-containing protein
Transcription factor jumonji jmjC domain protein {ECO:0000313|EMBL:ACU57846.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_137_curated_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10446..10736
DNA (291bp) protein (97aa)
ATP-dependent Clp protease adaptor protein ClpS n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TD82_NIAKG
ATP-dependent Clp protease adaptor protein ClpS; K06891 ATP-dependent Clp protease adaptor protein ClpS
ATP-dependent Clp protease adaptor protein ClpS {ECO:0000313|EMBL:AEV99322.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_137_curated_11
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10741..11472)
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Pontibacter roseus RepID=UPI000373C1E4
EcsC {ECO:0000313|EMBL:KIC89337.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_137_curated_12
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11481..13985)
DNA (2505bp) protein (835aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
replication restart DNA helicase PriA; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
Replication restart DNA helicase PriA n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TBW5_NIAKG
SCNpilot_expt_1000_bf_scaffold_137_curated_13
unknown

Not on your lists

14208..14699
DNA (492bp) protein (164aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_137_curated_14

Not on your lists

14690..15793
DNA (1104bp) protein (368aa)
Uncharacterized protein {ECO:0000313|EMBL:KKM83006.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_expt_1000_bf_scaffold_137_curated_15
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15844..17706)
DNA (1863bp) protein (621aa)
hypothetical protein n=1 Tax=Rudanella lutea RepID=UPI0003746CC2
Alpha-amylase {ECO:0000313|EMBL:AHF15227.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
alpha amylase catalytic region
SCNpilot_expt_1000_bf_scaffold_137_curated_16
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17795..18271)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDQ7_NIAKG
Thioesterase {ECO:0000313|EMBL:KIC89276.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_137_curated_17
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(18287..18781)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8ELZ9_RUNSL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI49824.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
SCNpilot_expt_1000_bf_scaffold_137_curated_18
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18783..20393)
DNA (1611bp) protein (537aa)
Peptidase C1A papain n=1 Tax=Niabella soli DSM 19437 RepID=H1NJ92_9SPHI
Peptidase C1 family protein {ECO:0000313|EMBL:GAO44782.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
cysteine protease
SCNpilot_expt_1000_bf_scaffold_137_curated_19
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20432..22366)
DNA (1935bp) protein (645aa)
Protein-disulfide reductase {ECO:0000313|EMBL:AEW03564.1}; EC=1.8.1.8 {ECO:0000313|EMBL:AEW03564.1};; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Protein-disulfide reductase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TE16_NIAKG
Protein-disulfide reductase
SCNpilot_expt_1000_bf_scaffold_137_curated_20
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22477..23265)
DNA (789bp) protein (263aa)
Condensin subunit ScpA n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL91_NIAKG
Segregation and condensation protein A {ECO:0000256|SAAS:SAAS00093938}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
condensin subunit ScpA; K05896 segregation and condensation protein A
SCNpilot_expt_1000_bf_scaffold_137_curated_21
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23343..24302)
DNA (960bp) protein (320aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00038007C4
Uncharacterized protein {ECO:0000313|EMBL:AHF16106.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_137_curated_22
Elizabethkingia meningoseptica, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24414..24782)
DNA (369bp) protein (123aa)
Large-conductance mechanosensitive channel n=1 Tax=Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535 RepID=R9CPK6_ELIME
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115}; TaxID=1216967 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535.;"
mscL; large conductance mechanosensitive channel protein; K03282 large conductance mechanosensitive channel
SCNpilot_expt_1000_bf_scaffold_137_curated_23
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(24902..25657)
DNA (756bp) protein (252aa)
Polyphosphate:AMP phosphotransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL94_NIAKG
Polyphosphate:AMP phosphotransferase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_1000_bf_scaffold_137_curated_24
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25693..26256)
DNA (564bp) protein (188aa)
Ribosome-recycling factor n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL96_NIAKG
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
ribosome recycling factor; K02838 ribosome recycling factor
SCNpilot_expt_1000_bf_scaffold_137_curated_25
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26323..27453)
DNA (1131bp) protein (377aa)
Glycosyl transferase, family 4, conserved region-containing protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL97_NIAKG
Glycosyl transferase, family 4, conserved region-containing protein
Glycosyl transferase, family 4, conserved region-containing protein {ECO:0000313|EMBL:AEW01938.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_137_curated_26
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

27683..28516
DNA (834bp) protein (278aa)
transketolase; K00615 transketolase [EC:2.2.1.1]
Transketolase domain protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PER8_CHIPD
Transketolase domain protein {ECO:0000313|EMBL:ACU57890.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_137_curated_27
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28684..30225)
DNA (1542bp) protein (514aa)
magnesium chelatase n=1 Tax=Segetibacter koreensis RepID=UPI00036D37FE
Magnesium chelatase {ECO:0000313|EMBL:AHF16798.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Mg chelatase subunit ChlI; K07391 magnesium chelatase family protein
SCNpilot_expt_1000_bf_scaffold_137_curated_28
unknown

Not on your lists

30499..30594
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_137_curated_29
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

30816..31478
DNA (663bp) protein (221aa)
GntR domain protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C8G1_SPHS2
GntR family transcriptional regulator
GntR domain protein {ECO:0000313|EMBL:ADZ80386.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_expt_1000_bf_scaffold_137_curated_30
Flavobacterium sp. KMS, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

31503..32723
DNA (1221bp) protein (407aa)
Major facilitator superfamily MFS_1 n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C8G2_SPHS2
Fosmidomycin resistance protein {ECO:0000313|EMBL:KIC00258.1}; TaxID=1566023 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. KMS.;"
major facilitator superfamily protein; K08223 MFS transporter, FSR family, fosmidomycin resistance protein
Displaying items 1-30 of 227 in total

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