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SCNpilot_expt_1000_bf_scaffold_2221_curated

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2221_curated_1
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(3..1436)
DNA (1434bp) protein (478aa)
SusC/RagA family TonB-linked outer membrane protein id=2170028 bin=GWE2_Bacteroidetes_42_39 species=Parabacteroides sp. ASF519 genus=Parabacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_39 organism_group=Bacteroidetes organism_desc=Good +
TonB-dependent receptor plug
Tax=GWE2_Bacteroidetes_42_39_curated
SCNpilot_expt_1000_bf_scaffold_2221_curated_2
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1569..2645)
DNA (1077bp) protein (359aa)
Anti-FecI sigma factor, FecR n=1 Tax=Niabella soli DSM 19437 RepID=H1NKG9_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF18093.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
anti-FecI sigma factor FecR
SCNpilot_expt_1000_bf_scaffold_2221_curated_3
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(2692..3291)
DNA (600bp) protein (200aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niabella soli DSM 19437 RepID=H1NL78_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17115.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_2221_curated_4
unknown

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comp(3299..3604)
DNA (306bp) protein (102aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2221_curated_5
Bacteroides sp. CAG:189, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(3614..4714)
DNA (1101bp) protein (367aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003665751
Uncharacterized protein {ECO:0000313|EMBL:CCY51771.1}; TaxID=1262737 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:189.;"
Transcriptional regulator/sugar kinase
SCNpilot_expt_1000_bf_scaffold_2221_curated_6
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(4701..5867)
DNA (1167bp) protein (389aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037146E7
Glucose/galactose transporter {ECO:0000313|EMBL:CEA15313.1}; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
glucose/galactose transporter
SCNpilot_expt_1000_bf_scaffold_2221_curated_7
Bacteroides finegoldii, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(5884..7605)
DNA (1722bp) protein (574aa)
Phosphomannose isomerase (EC:5.3.1.8)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036AEDCC
Uncharacterized protein {ECO:0000313|EMBL:EKJ89108.1}; TaxID=997888 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides finegoldii CL09T03C10.;"
SCNpilot_expt_1000_bf_scaffold_2221_curated_8
Bacteroides clarus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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7711..8442
DNA (732bp) protein (244aa)
UbiC transcription regulator-associated domain protein n=1 Tax=Bacteroides clarus YIT 12056 RepID=F3PIT0_9BACE
UbiC transcription regulator-associated domain protein {ECO:0000313|EMBL:EGF51387.1}; TaxID=762984 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides clarus YIT 12056.;"
transcriptional regulator, GntR family
SCNpilot_expt_1000_bf_scaffold_2221_curated_9
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(8439..10052)
DNA (1614bp) protein (538aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
glutamyl-tRNA synthetase; K01885 glutamyl-tRNA synthetase [EC:6.1.1.17]
Glutamate--tRNA ligase n=1 Tax=Niabella soli DSM 19437 RepID=H1NR08_9SPHI
SCNpilot_expt_1000_bf_scaffold_2221_curated_10
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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10097..10939
DNA (843bp) protein (281aa)
Oxidoreductase n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GMZ2_9SPHI
Oxidoreductase {ECO:0000313|EMBL:EOR93076.1}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
oxidoreductase domain-containing protein
Displaying 10 items

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