ggKbase home page

SCNpilot_expt_1000_bf_scaffold_2825_curated

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2825_curated_1
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(168..1124)
DNA (957bp) protein (319aa)
copper transport-related membrane protein; K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
Putative copper transport-related membrane protein n=1 Tax=Croceibacter atlanticus (strain ATCC BAA-628 / HTCC2559 / KCTC 12090) RepID=A3U4H4_CROAH
Copper transporter {ECO:0000313|EMBL:KEQ31116.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
SCNpilot_expt_1000_bf_scaffold_2825_curated_2
RBG_16_Actinobacteria_67_15_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

1320..1817
DNA (498bp) protein (166aa)
KLTH0D05698p n=1 Tax=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) RepID=C5DGJ0_LACTC id=5225052 bin=16ft_combo_ws3_JS1 species=Lachancea thermotolerans genus=Lachancea taxon_order=Saccharomycetales taxon_class=Saccharomycetes phylum=Ascomycota tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_Actinobacteria_67_15_curated
SCNpilot_expt_1000_bf_scaffold_2825_curated_3
Galbibacter marinus, Galbibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2737..3282)
DNA (546bp) protein (182aa)
Isochorismatase hydrolase n=1 Tax=Galbibacter marinus RepID=K2PSK7_9FLAO
Isochorismatase hydrolase {ECO:0000313|EMBL:EKF55550.1}; TaxID=555500 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Galbibacter.;" source="Galbibacter marinus.;"
isochorismatase hydrolase
SCNpilot_expt_1000_bf_scaffold_2825_curated_4
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(3353..3601)
DNA (249bp) protein (83aa)
hypothetical protein n=1 Tax=Pontibacter roseus RepID=UPI000360EB5B
AraC family transcriptional regulator {ECO:0000313|EMBL:AKD04073.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2825_curated_5
Chryseobacterium solincola, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3744..4073)
DNA (330bp) protein (110aa)
Transcriptional regulator, AraC family n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C759_SPHS2
AraC family transcriptional regulator {ECO:0000313|EMBL:KIA82610.1}; TaxID=510955 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium solincola.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2825_curated_6
Epilithonimonas lactis, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4101..4685)
DNA (585bp) protein (195aa)
Transcriptional regulator, AraC family n=2 Tax=Bacteroidetes RepID=F0S649_PEDSD
AraC family transcriptional regulator {ECO:0000313|EMBL:KFC22353.1}; TaxID=421072 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas lactis.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2825_curated_7
Chryseobacterium sp. JM1, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4826..7240)
DNA (2415bp) protein (805aa)
TonB-dependent receptor n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W2S3_9FLAO
TonB-dependent receptor {ECO:0000313|EMBL:KFF22377.1}; TaxID=1233950 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. JM1.;"
TonB-dependent receptor plug
SCNpilot_expt_1000_bf_scaffold_2825_curated_8
Chryseobacterium piperi, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7244..7672)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IF03_FLUTR
Uncharacterized protein {ECO:0000313|EMBL:KFF14948.1}; TaxID=558152 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium piperi.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2825_curated_9
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7992..8306
DNA (315bp) protein (105aa)
Regulatory protein ArsR n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CBB0_SPHS2
regulatory protein ArsR
Regulatory protein ArsR {ECO:0000313|EMBL:ADZ81521.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_expt_1000_bf_scaffold_2825_curated_10
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

8366..9343
DNA (978bp) protein (326aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000379BA3F
Activator of Hsp90 ATPase 1 family protein
Activator of Hsp90 ATPase 1 family protein {ECO:0000313|EMBL:ACT95478.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_expt_1000_bf_scaffold_2825_curated_11
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9340..9840
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037C6299
activator of Hsp90 ATPase 1 family protein
Activator of Hsp90 ATPase 1 family protein {ECO:0000313|EMBL:ADZ81522.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_expt_1000_bf_scaffold_2825_curated_12
Chryseobacterium sp. CF314, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10076..10279)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CG43_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EJL70716.1}; TaxID=1144316 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. CF314.;"
SCNpilot_expt_1000_bf_scaffold_2825_curated_13
Chryseobacterium sp. CF314, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10829..11236)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CG43_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EJL70716.1}; TaxID=1144316 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. CF314.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2825_curated_14
Chryseobacterium sp. CF314, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11233..11883)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J2SYI2_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EJL70717.1}; TaxID=1144316 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. CF314.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2825_curated_15
Epilithonimonas lactis, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

11962..12225
DNA (264bp) protein (88aa)
transposase IS4 n=1 Tax=Cytophagales str. B6 RepID=UPI0003B2FB9E
Transposase {ECO:0000313|EMBL:KFC17909.1}; TaxID=421072 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas lactis.;"
transposase IS4 family protein
Displaying 15 items

View Taxonomy