ggKbase home page

SCNpilot_expt_1000_bf_scaffold_4219_curated

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4219_curated_1
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2..181)
DNA (180bp) protein (60aa)
phosphoribosylamine--glycine ligase; K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13]
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Phosphoribosylamine--glycine ligase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PD73_CHIPD
SCNpilot_expt_1000_bf_scaffold_4219_curated_2
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

582..1154
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036BD42F
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEW00235.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_4219_curated_3
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1147..1506
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NUD2_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17678.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4219_curated_4
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1641..2087
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035C3F2A
Uncharacterized protein {ECO:0000313|EMBL:AHF17679.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_4219_curated_5
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2302..4770)
DNA (2469bp) protein (823aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; K01775 alanine racemase [EC:5.1.1.1]
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036F7D04
Alanine racemase {ECO:0000313|EMBL:AHF16364.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_4219_curated_6
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4878..5861)
DNA (984bp) protein (328aa)
UDP-glucuronate decarboxylase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
UDP-glucuronate decarboxylase n=1 Tax=Niabella soli DSM 19437 RepID=H1NUN2_9SPHI
Epimerase {ECO:0000313|EMBL:AHF15745.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_4219_curated_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5871..6887)
DNA (1017bp) protein (339aa)
nucleotide sugar dehydrogenase; K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22]
Nucleotide sugar dehydrogenase n=1 Tax=Niabella soli DSM 19437 RepID=H1NJ73_9SPHI
UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:AHF14151.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_4219_curated_8
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8201..9253)
DNA (1053bp) protein (351aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
rmlB; dTDP-glucose 4,6-dehydratase (EC:4.2.1.46); K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
dTDP-glucose 4,6-dehydratase n=1 Tax=Niabella soli DSM 19437 RepID=H1NJG0_9SPHI
SCNpilot_expt_1000_bf_scaffold_4219_curated_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9382..9882)
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000375D5D6
NusG antitermination factor
NusG antitermination factor {ECO:0000313|EMBL:AEW02968.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_4219_curated_10
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10134..11201
DNA (1068bp) protein (356aa)
membrane protein n=1 Tax=Niabella aurantiaca RepID=UPI00037AF298
Membrane protein {ECO:0000313|EMBL:AHF15747.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4219_curated_11
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11307..11684)
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036D4EE7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02951.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_4219_curated_12
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12134..12358
DNA (225bp) protein (75aa)
Beta-lactamase {ECO:0000256|RuleBase:RU361140}; EC=3.5.2.6 {ECO:0000256|RuleBase:RU361140};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Beta-lactamase n=1 Tax=Niabella soli DSM 19437 RepID=H1NUN5_9SPHI
Displaying 12 items

View Taxonomy