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SCNpilot_expt_1000_bf_scaffold_4325_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4325_curated_1
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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208..1224
DNA (1017bp) protein (339aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
UDP-N-acetylmuramate dehydrogenase; K00075 UDP-N-acetylmuramate dehydrogenase [EC:1.1.1.158]
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Niabella soli DSM 19437 RepID=H1NKG0_9SPHI
SCNpilot_expt_1000_bf_scaffold_4325_curated_2
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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1319..2002
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036B4CEB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU57718.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_4325_curated_3
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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2174..3718
DNA (1545bp) protein (515aa)
Na+/solute symporter n=1 Tax=Niabella soli DSM 19437 RepID=H1NN24_9SPHI
Sodium:solute symporter {ECO:0000313|EMBL:AHF15389.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4325_curated_4
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3826..4464
DNA (639bp) protein (213aa)
O-methyltransferase n=1 Tax=Niabella aurantiaca RepID=UPI00036D1D4D
O-methyltransferase {ECO:0000313|EMBL:AHF15388.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
O-methyltransferase family protein
SCNpilot_expt_1000_bf_scaffold_4325_curated_5
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4476..5456
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037A9197
mannosyl-glycoprotein endo-beta-N-acetylglucosamidase
Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase {ECO:0000313|EMBL:AEW01742.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_4325_curated_6
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5490..6026
DNA (537bp) protein (179aa)
hypoxanthine phosphoribosyltransferase; K00760 hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
hypoxanthine phosphoribosyltransferase n=1 Tax=Niabella aurantiaca RepID=UPI0003798209
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:AHF15386.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_4325_curated_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6086..6508
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000378FEB2
Uncharacterized protein {ECO:0000313|EMBL:AHF18080.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
cytochrome d ubiquinol oxidase subunit II
SCNpilot_expt_1000_bf_scaffold_4325_curated_8
unknown

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comp(6505..6690)
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4325_curated_9
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6830..7051)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NSG1_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF15546.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4325_curated_10
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7514..7897
DNA (384bp) protein (128aa)
Lipoprotein-releasing system ATP-binding protein LolD {ECO:0000256|HAMAP-Rule:MF_01708}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01708};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Phosphonate-transporting ATPase n=1 Tax=Niabella soli DSM 19437 RepID=H1NSG2_9SPHI
Fe(3+)-transporting ATPase
SCNpilot_expt_1000_bf_scaffold_4325_curated_11
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7949..9151
DNA (1203bp) protein (401aa)
Aspartate aminotransferase {ECO:0000313|EMBL:AHF15336.1}; EC=2.6.1.1 {ECO:0000313|EMBL:AHF15336.1};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
aspartate transaminase; K00812 aspartate aminotransferase [EC:2.6.1.1]
Aspartate transaminase n=1 Tax=Niabella soli DSM 19437 RepID=H1NN92_9SPHI
SCNpilot_expt_1000_bf_scaffold_4325_curated_12
Desulfosporosinus acidiphilus, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9148..9720)
DNA (573bp) protein (191aa)
Sortase-like acyltransferase n=1 Tax=Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4) RepID=I4D4D6_DESAJ
sortase-like acyltransferase
Sortase-like acyltransferase {ECO:0000313|EMBL:AFM40660.1}; TaxID=646529 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4).;"
SCNpilot_expt_1000_bf_scaffold_4325_curated_13
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9862..10716
DNA (855bp) protein (285aa)
ammonia channel protein n=1 Tax=Niabella aurantiaca RepID=UPI00036BC1DE
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
ammonium transporter; K03320 ammonium transporter, Amt family
SCNpilot_expt_1000_bf_scaffold_4325_curated_14
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10736..11179
DNA (444bp) protein (148aa)
ammonia channel protein n=1 Tax=Pedobacter arcticus RepID=UPI0002DCC6B7
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
ammonium transporter; K03320 ammonium transporter, Amt family
SCNpilot_expt_1000_bf_scaffold_4325_curated_15
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11243..12466)
DNA (1224bp) protein (408aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
diaminopimelate decarboxylase; K01586 diaminopimelate decarboxylase [EC:4.1.1.20]
diaminopimelate decarboxylase n=1 Tax=Niabella aurantiaca RepID=UPI000381FB9B
SCNpilot_expt_1000_bf_scaffold_4325_curated_16
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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comp(12476..12892)
DNA (417bp) protein (139aa)
Chromosome segregation and condensation protein, ScpB n=1 Tax=Niabella soli DSM 19437 RepID=H1NRK8_9SPHI
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
Displaying 16 items

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