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SCNpilot_expt_1000_bf_scaffold_860_curated

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_860_curated_1
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2..307)
DNA (306bp) protein (102aa)
Heparinase II/III family protein id=4483453 bin=GWC2_Bacteroidetes_46_850 species=Fibrisoma limi genus=Fibrisoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
heparinase II/III family protein
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_expt_1000_bf_scaffold_860_curated_2
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

553..1158
DNA (606bp) protein (202aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035E37B2
Uncharacterized protein {ECO:0000313|EMBL:AHF16925.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_860_curated_3
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1155..1832)
DNA (678bp) protein (226aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7N1_PALPW
Uncharacterized protein {ECO:0000313|EMBL:GAO42009.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_860_curated_4
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1939..2211
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000364B9DB
Uncharacterized protein {ECO:0000313|EMBL:KIC91054.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
SCNpilot_expt_1000_bf_scaffold_860_curated_5
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3104..3538)
DNA (435bp) protein (145aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
peptidase M50; K11749 regulator of sigma E protease [EC:3.4.24.-]
Peptidase M50 n=1 Tax=Niabella soli DSM 19437 RepID=H1NKH6_9SPHI
SCNpilot_expt_1000_bf_scaffold_860_curated_6
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4603..5757)
DNA (1155bp) protein (385aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinopha
1-deoxy-D-xylulose 5-phosphate reductoisomerase; K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Niabella aurantiaca RepID=UPI000378B8B9
SCNpilot_expt_1000_bf_scaffold_860_curated_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5892..7325)
DNA (1434bp) protein (478aa)
GH3 auxin-responsive promoter n=1 Tax=Niabella soli DSM 19437 RepID=H1NKH8_9SPHI
Gh3 auxin-responsive promoter {ECO:0000313|EMBL:AHF16908.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
GH3 auxin-responsive promoter
SCNpilot_expt_1000_bf_scaffold_860_curated_8
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


7546..7845
DNA (300bp) protein (100aa)
50S ribosomal protein L21 n=1 Tax=Niabella soli DSM 19437 RepID=H1NKH9_9SPHI
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
50S ribosomal protein L21; K02888 large subunit ribosomal protein L21
SCNpilot_expt_1000_bf_scaffold_860_curated_9
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


7925..8185
DNA (261bp) protein (87aa)
50S ribosomal protein L27 n=1 Tax=Niabella soli DSM 19437 RepID=H1NKI0_9SPHI
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
50S ribosomal protein L27P; K02899 large subunit ribosomal protein L27
SCNpilot_expt_1000_bf_scaffold_860_curated_10
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8298..8624
DNA (327bp) protein (109aa)
Putative histone H1-like protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PJP9_CHIPD
histone H1-like protein
Putative histone H1-like protein {ECO:0000313|EMBL:ACU63809.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_860_curated_11
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8621..10306
DNA (1686bp) protein (562aa)
PHP domain protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NKI2_9SPHI
Histidinol phosphatase {ECO:0000313|EMBL:AHF16904.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
PHP domain-containing protein; K02347 DNA polymerase (family X)
SCNpilot_expt_1000_bf_scaffold_860_curated_12
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10301..10885)
DNA (585bp) protein (195aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Niabella soli DSM 19437 RepID=H1NKI3_9SPHI
integral membrane sensor signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_860_curated_13
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10848..12242)
DNA (1395bp) protein (465aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000368D1B5
integral membrane sensor signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_860_curated_14
unknown

Not on your lists

13002..13373
DNA (372bp) protein (124aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_860_curated_15
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14076..14870)
DNA (795bp) protein (265aa)
MazG family protein; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19]
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000366B1BC
Pyrophosphatase {ECO:0000313|EMBL:KIC91336.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
SCNpilot_expt_1000_bf_scaffold_860_curated_16
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15033..15860)
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037E247B
XynC protein {ECO:0000313|EMBL:AHF16902.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
esterase
SCNpilot_expt_1000_bf_scaffold_860_curated_17
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15918..17165)
DNA (1248bp) protein (416aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FTI0_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EEI93783.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_860_curated_18
Parabacteroides gordonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17178..17882)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Parabacteroides sp. CAG:409 RepID=R7JB56_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KKB53963.1}; TaxID=1203610 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides gordonii MS-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_860_curated_19
Ornithobacterium rhinotracheale, Ornithobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18129..20405)
DNA (2277bp) protein (759aa)
Alpha-1,2-mannosidase, putative n=1 Tax=Ornithobacterium rhinotracheale (strain ATCC 51463 / DSM 15997 / CCUG 23171 / LMG 9086) RepID=I4A0R9_ORNRL
alpha-1,2-mannosidase
Alpha-1,2-mannosidase, putative {ECO:0000313|EMBL:AFL97553.1}; TaxID=867902 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Ornithobacterium.;" source="Ornithobacterium rhinotracheale (strain ATCC 51463 / DSM 15997 / CCUG; 23171 / LMG 9086).;"
SCNpilot_expt_1000_bf_scaffold_860_curated_20
Elizabethkingia miricola, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

20696..21013
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Sulfurovum sp. SCGC AAA036-F05 RepID=UPI000361622E
Uncharacterized protein {ECO:0000313|EMBL:KGO10827.1}; TaxID=172045 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia miricola (Chryseobacterium miricola).;"
integrase catalytic subunit
SCNpilot_expt_1000_bf_scaffold_860_curated_21
unknown

Not on your lists

20982..21179
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_860_curated_22
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21156..22361)
DNA (1206bp) protein (402aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8X2J9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK05689.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
Predicted glycosyl hydrolase
SCNpilot_expt_1000_bf_scaffold_860_curated_23
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22494..24287)
DNA (1794bp) protein (598aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Elongation factor 4 n=1 Tax=Niabella soli DSM 19437 RepID=H1NJG7_9SPHI
GTP-binding protein lepA; K03596 GTP-binding protein LepA
SCNpilot_expt_1000_bf_scaffold_860_curated_24
Tannerella sp. oral taxon BU063, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24376..25209)
DNA (834bp) protein (278aa)
dihydropteroate synthase; K00796 dihydropteroate synthase [EC:2.5.1.15]
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003760E83
Dihydropteroate synthase {ECO:0000313|EMBL:ETK10607.1}; TaxID=1411021 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella.;" source="Tannerella sp. oral taxon BU063 isolate Cell 6/7/9.;"
SCNpilot_expt_1000_bf_scaffold_860_curated_25
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25350..25901
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NMK7_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF14671.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_860_curated_26
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25898..27016
DNA (1119bp) protein (373aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036348D1
Uncharacterized protein {ECO:0000313|EMBL:AHF17255.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
DoxX family protein
SCNpilot_expt_1000_bf_scaffold_860_curated_27
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

27101..28111
DNA (1011bp) protein (337aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Niabella soli DSM 19437 RepID=H1NMK5_9SPHI
ABC transporter permease {ECO:0000313|EMBL:AHF14672.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
ABC transporter; K02033 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_860_curated_28
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28115..28396)
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003701712
Uncharacterized protein {ECO:0000313|EMBL:AHF14673.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_860_curated_29
Elizabethkingia miricola, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

28482..29924
DNA (1443bp) protein (481aa)
Amino acid permease n=1 Tax=Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535 RepID=R9CIV1_ELIME
Aromatic amino acid transporter {ECO:0000313|EMBL:KGO09852.1}; TaxID=172045 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia miricola (Chryseobacterium miricola).;"
amino acid permease; K03293 amino acid transporter, AAT family
SCNpilot_expt_1000_bf_scaffold_860_curated_30
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29919..31001)
DNA (1083bp) protein (361aa)
DNA replication and repair protein RecF n=1 Tax=Niabella soli DSM 19437 RepID=H1NMJ8_9SPHI
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
DNA replication and repair protein RecF; K03629 DNA replication and repair protein RecF
Displaying items 1-30 of 42 in total

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