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SCNpilot_expt_1000_bf_scaffold_2016_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2016_curated_1
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3..1400
DNA (1398bp) protein (466aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036CE639
Uncharacterized protein {ECO:0000313|EMBL:AHF17758.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
surface antigen variable number repeat-containing protein
SCNpilot_expt_1000_bf_scaffold_2016_curated_2
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1405..2286
DNA (882bp) protein (294aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
inorganic polyphosphate/ATP-NAD kinase; K00858 NAD+ kinase [EC:2.7.1.23]
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Niabella soli DSM 19437 RepID=H1NQT8_9SPHI
SCNpilot_expt_1000_bf_scaffold_2016_curated_3
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2292..3710)
DNA (1419bp) protein (473aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NUX9_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17702.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2016_curated_4
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3827..4447
DNA (621bp) protein (207aa)
recombinase RecR n=1 Tax=Niabella aurantiaca RepID=UPI000376684D
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
DNA replication and repair protein RecR; K06187 recombination protein RecR
SCNpilot_expt_1000_bf_scaffold_2016_curated_5
Oleispira antarctica, Oleispira, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4659..6059
DNA (1401bp) protein (467aa)
Response regulator n=1 Tax=Oleispira antarctica RB-8 RepID=R4YPI2_OLEAN
Response regulator {ECO:0000313|EMBL:CCK77036.1}; TaxID=698738 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Oleispira.;" source="Oleispira antarctica RB-8.;"
SCNpilot_expt_1000_bf_scaffold_2016_curated_6
Leeuwenhoekiella blandensis, Leeuwenhoekiella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

6246..6581
DNA (336bp) protein (112aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=398720 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Leeuwenhoekiella.;" source="Leeuwenhoekiella blandensis (strain CECT 7118 / CCUG 51940 / MED217); (Flavobacterium sp. (strain MED217)).;"
Sensory box histidine kinase n=1 Tax=Leeuwenhoekiella blandensis (strain CECT 7118 / CCUG 51940 / MED217) RepID=A3XHI9_LEEBM
signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_2016_curated_7
Flavobacterium reichenbachii, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6587..7255)
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Gracilimonas tropica RepID=UPI000382E8F2
LuxR family transcriptional regulator {ECO:0000313|EMBL:KFF05495.1}; TaxID=362418 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium reichenbachii.;"
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
SCNpilot_expt_1000_bf_scaffold_2016_curated_8
unknown

Not on your lists

comp(7231..7467)
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2016_curated_9
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7451..9298)
DNA (1848bp) protein (616aa)
Amidophosphoribosyltransferase; K00764 amidophosphoribosyltransferase [EC:2.4.2.14]
amidophosphoribosyltransferase n=1 Tax=Niabella aurantiaca RepID=UPI00036F80B6
Amidophosphoribosyltransferase {ECO:0000313|EMBL:AHF15962.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_2016_curated_10
Myroides odoratimimus, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9466..11151)
DNA (1686bp) protein (562aa)
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B6916A
Uncharacterized protein {ECO:0000313|EMBL:EHO08062.1}; TaxID=883154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides odoratimimus CIP 101113.;"
SCNpilot_expt_1000_bf_scaffold_2016_curated_11
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11341..11769)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMC4_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW00906.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_2016_curated_12
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12125..13648)
DNA (1524bp) protein (508aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
lysyl-tRNA synthetase; K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6]
lysyl-tRNA synthetase n=1 Tax=Niabella aurantiaca RepID=UPI0003665B16
SCNpilot_expt_1000_bf_scaffold_2016_curated_13
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13929..14960)
DNA (1032bp) protein (344aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000366E318
Uncharacterized protein {ECO:0000313|EMBL:AHF17914.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2016_curated_14
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14965..15342)
DNA (378bp) protein (126aa)
Beta-ketoacyl-acyl-carrier-protein synthase II n=1 Tax=Niabella soli DSM 19437 RepID=H1NQH1_9SPHI
3-oxoacyl-ACP synthase {ECO:0000313|EMBL:AHF16420.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
3-oxoacyl-ACP synthase
SCNpilot_expt_1000_bf_scaffold_2016_curated_15
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16162..16425)
DNA (264bp) protein (88aa)
acyl carrier protein n=1 Tax=Niabella aurantiaca RepID=UPI00035C15E5
Acyl carrier protein {ECO:0000313|EMBL:AHF16421.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
dltC; acyl carrier protein; K02078 acyl carrier protein
SCNpilot_expt_1000_bf_scaffold_2016_curated_16
unknown

Not on your lists

comp(16475..16693)
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2016_curated_17
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16878..17258
DNA (381bp) protein (127aa)
endoribonuclease (EC:3.1.-.-); K07567 TdcF protein
endoribonuclease L-PSP n=1 Tax=Niabella aurantiaca RepID=UPI0003785BBA
Endoribonuclease L-PSP {ECO:0000313|EMBL:AHF16496.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_2016_curated_18
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17327..18637
DNA (1311bp) protein (437aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; K00790 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Niabella soli DSM 19437 RepID=H1NQA2_9SPHI
SCNpilot_expt_1000_bf_scaffold_2016_curated_19
Mariniradius saccharolyticus, Mariniradius, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(18741..19922)
DNA (1182bp) protein (394aa)
Phosphoenolpyruvate carboxykinase [GTP] {ECO:0000256|HAMAP-Rule:MF_00452, ECO:0000256|SAAS:SAAS00222031}; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00452};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00452};; EC=4.1.1.32 {ECO:0000256|HAMAP-Rule:MF_00452};; TaxID=1239962 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Mariniradius.;" source="Mariniradius saccharolyticus AK6.;"
phosphoenolpyruvate carboxykinase; K01596 phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
Phosphoenolpyruvate carboxykinase [GTP] n=1 Tax=Mariniradius saccharolyticus AK6 RepID=M7Y1U6_9BACT
SCNpilot_expt_1000_bf_scaffold_2016_curated_20
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20759..21655)
DNA (897bp) protein (299aa)
Beta-lactamase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCL6_NIAKG
beta-lactamase
Beta-lactamase {ECO:0000313|EMBL:AEW02556.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_2016_curated_21
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21961..22419
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000361E834
Uncharacterized protein {ECO:0000313|EMBL:AHF17834.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
endonuclease/exonuclease/phosphatase
Displaying 21 items

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