ggKbase home page

SCNpilot_expt_1000_bf_scaffold_4560_curated

Search features with annotation key words

Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4560_curated_1
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(105..878)
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S8K4_PEDSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY51288.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_expt_1000_bf_scaffold_4560_curated_2
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1019..1801)
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036F8FCF
Carbohydrate acetyl esterase/feruloyl esterase {ECO:0000313|EMBL:KHJ36703.1}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4560_curated_3
Bacteroides thetaiotaomicron, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1808..2947)
DNA (1140bp) protein (380aa)
Sialidase n=2 Tax=Bacteroides RepID=D7IGH4_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EOR97073.1}; TaxID=1235785 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides thetaiotaomicron dnLKV9.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_4560_curated_4
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3057..5942
DNA (2886bp) protein (962aa)
Glycoside hydrolase family 2 TIM barrel n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XSG4_PEDHD
glycoside hydrolase family protein
Glycoside hydrolase family 2 TIM barrel {ECO:0000313|EMBL:ACU03509.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_expt_1000_bf_scaffold_4560_curated_5
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5958..6677
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036601F1
hypothetical protein
Tax=GWE2_Bacteroidetes_42_39_curated
SCNpilot_expt_1000_bf_scaffold_4560_curated_6
Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

6697..7053
DNA (357bp) protein (119aa)
hypothetical protein; K05970 sialate O-acetylesterase [EC:3.1.1.53]
Uncharacterized protein n=1 Tax=Caldicellulosiruptor kronotskyensis (strain DSM 18902 / VKM B-2412 / 2002) RepID=E4SHW7_CALK2
Uncharacterized protein {ECO:0000313|EMBL:ADQ47342.1}; TaxID=632348 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor kronotskyensis (strain DSM 18902 / VKM B-2412 /; 2002).;"
Displaying 6 items

View Taxonomy