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SCNpilot_expt_1000_bf_scaffold_568_curated

Search features with annotation key words

Displaying items 1-30 of 76 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_568_curated_1
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3..416)
DNA (414bp) protein (138aa)
aspartyl-tRNA amidotransferase subunit B n=1 Tax=Niabella aurantiaca RepID=UPI00036176F5
Aspartyl-tRNA amidotransferase subunit B {ECO:0000313|EMBL:AHF15942.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein; K09117 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_568_curated_2
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(515..865)
DNA (351bp) protein (117aa)
protein involved in gliding motility GldC n=1 Tax=Niabella aurantiaca RepID=UPI0003729324
Protein involved in gliding motility GldC {ECO:0000313|EMBL:AHF15943.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_568_curated_3
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(974..2032)
DNA (1059bp) protein (353aa)
Glycosyl transferase group 1 n=1 Tax=Niabella soli DSM 19437 RepID=H1NQU5_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17761.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_568_curated_4
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2045..2464)
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000371F82B
Uncharacterized protein {ECO:0000313|EMBL:AHF17808.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
AIG2 family protein
SCNpilot_expt_1000_bf_scaffold_568_curated_5
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2498..2794)
DNA (297bp) protein (99aa)
Peptidase S41 n=1 Tax=Niabella soli DSM 19437 RepID=H1NUZ2_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17902.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
peptidase S41
SCNpilot_expt_1000_bf_scaffold_568_curated_6
Psychroflexus torquis, Psychroflexus, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2797..3237)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Polaribacter franzmannii RepID=UPI000382AA5D
transposase, IS630/ISSod10 family, OrfB
Transposase, IS630/ISSod10 family, OrfB {ECO:0000313|EMBL:AFU69333.1}; TaxID=313595 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Psychroflexus.;" source="Psychroflexus torquis (strain ATCC 700755 / ACAM 623).;"
SCNpilot_expt_1000_bf_scaffold_568_curated_7
unknown

Not on your lists

comp(3282..3794)
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036C56F3
SCNpilot_expt_1000_bf_scaffold_568_curated_8
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4017..5285)
DNA (1269bp) protein (423aa)
Oxidoreductase domain protein id=1867049 bin=GWA2_Bacteroidetes_42_15 species=Cyclobacterium marinum genus=Cyclobacterium taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWA2_Bacteroidetes_42_15 organism_group=Bacteroidetes
oxidoreductase domain-containing protein
Tax=GWE2_Bacteroidetes_42_39_curated
SCNpilot_expt_1000_bf_scaffold_568_curated_9
Melioribacter roseus, Melioribacter, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

5450..5917
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Melioribacter roseus (strain P3M) RepID=I6Z504_MELRP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFN74235.1}; TaxID=1191523 species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Melioribacteraceae; Melioribacter.;" source="Melioribacter roseus (strain JCM 17771 / P3M-2).;"
SCNpilot_expt_1000_bf_scaffold_568_curated_10
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5976..7889
DNA (1914bp) protein (638aa)
RecQ familyATP-dependent DNA helicase; K03654 ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
ATP-dependent DNA helicase RecQ n=1 Tax=Niabella aurantiaca RepID=UPI00036A2C6C
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:AHF15864.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_568_curated_11
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8039..8608
DNA (570bp) protein (190aa)
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NUV1_9SPHI
Translation factor Sua5 {ECO:0000313|EMBL:AHF15771.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
translation factor SUA5; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein
SCNpilot_expt_1000_bf_scaffold_568_curated_12
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8664..10118
DNA (1455bp) protein (485aa)
tRNA nucleotidyltransferase n=1 Tax=Niabella aurantiaca RepID=UPI0003817AD8
tRNA nucleotidyltransferase {ECO:0000313|EMBL:AHF15772.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
polynucleotide adenylyltransferase/metal dependent phosphohydrolase
SCNpilot_expt_1000_bf_scaffold_568_curated_13
Flavobacteriales bacterium BRH_c54, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10121..10681)
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003684374
Uncharacterized protein {ECO:0000313|EMBL:KJS04267.1}; TaxID=1629721 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium BRH_c54.;"
ycii-related protein
SCNpilot_expt_1000_bf_scaffold_568_curated_14
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10624..11079)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NQ09_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF15840.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_568_curated_15

Not on your lists

comp(11172..11606)
DNA (435bp) protein (145aa)
Uncharacterized protein n=2 Tax=Bacteroides uniformis RepID=I9A445_BACUN
Uncharacterized protein {ECO:0000313|EMBL:KKL53241.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_568_curated_16
unknown

Not on your lists

comp(11952..12182)
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_568_curated_17
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(12331..13002)
DNA (672bp) protein (224aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000381783A
Glycoside hydrolase family 13 {ECO:0000313|EMBL:KIC89958.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
30S ribosomal protein S2; K02967 small subunit ribosomal protein S2
SCNpilot_expt_1000_bf_scaffold_568_curated_18
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13269..13997
DNA (729bp) protein (243aa)
Crp/Fnr family transcriptional regulator n=1 Tax=Niabella aurantiaca RepID=UPI0003815207
Crp/Fnr family transcriptional regulator {ECO:0000313|EMBL:AHF15890.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Crp/Fnr family transcriptional regulator; K09992 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_568_curated_19
Mariniradius saccharolyticus, Mariniradius, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

14116..14862
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00037C90ED
Error-prone repair protein ImuA {ECO:0000313|EMBL:EMS31641.1}; TaxID=1239962 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Mariniradius.;" source="Mariniradius saccharolyticus AK6.;"
hypothetical protein; K14160 protein ImuA
SCNpilot_expt_1000_bf_scaffold_568_curated_20
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14862..16358
DNA (1497bp) protein (499aa)
Nucleotidyltransferase/DNA polymerase involved in DNA repair n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PT58_CHIPD
DNA repair nucleotidyltransferase/DNA polymerase; K14161 protein ImuB
Nucleotidyltransferase/DNA polymerase involved in DNA repair {ECO:0000313|EMBL:ACU60848.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_568_curated_21
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16447..19686
DNA (3240bp) protein (1080aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
DNA polymerase III subunit alpha; K14162 error-prone DNA polymerase [EC:2.7.7.7]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000366014B
SCNpilot_expt_1000_bf_scaffold_568_curated_22
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

19759..21102
DNA (1344bp) protein (448aa)
amine oxidase; K00274 monoamine oxidase [EC:1.4.3.4]
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003634871
Amine oxidase {ECO:0000313|EMBL:ACT96279.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_expt_1000_bf_scaffold_568_curated_23
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21201..23372)
DNA (2172bp) protein (724aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003628258
Uncharacterized protein {ECO:0000313|EMBL:AHF17850.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
phage shock protein C, PspC
SCNpilot_expt_1000_bf_scaffold_568_curated_24
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(23388..23849)
DNA (462bp) protein (154aa)
PadR family transcriptional regulator n=1 Tax=Niabella aurantiaca RepID=UPI00035CF309
PadR family transcriptional regulator {ECO:0000313|EMBL:GAL86682.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
PadR family transcriptional regulator; K10947 PadR family transcriptional regulator, regulatory protein PadR
SCNpilot_expt_1000_bf_scaffold_568_curated_25
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23913..24890
DNA (978bp) protein (326aa)
Glyoxylate reductase n=1 Tax=Niabella soli DSM 19437 RepID=H1NTI2_9SPHI
Hydroxyacid dehydrogenase {ECO:0000313|EMBL:AHF16136.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
D-isomer specific 2-hydroxyacid dehydrogenase
SCNpilot_expt_1000_bf_scaffold_568_curated_26
unknown

Not on your lists

24974..25420
DNA (447bp) protein (149aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_568_curated_27
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25606..26835)
DNA (1230bp) protein (410aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037DC981
Uncharacterized protein {ECO:0000313|EMBL:AHF16182.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_568_curated_28
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26900..28462)
DNA (1563bp) protein (521aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037FE0B6
Uncharacterized protein {ECO:0000313|EMBL:AHF16109.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_568_curated_29
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29577..29969)
DNA (393bp) protein (131aa)
alpha-L-rhamnosidase; K05989 alpha-L-rhamnosidase [EC:3.2.1.40]
Alpha-L-rhamnosidase n=1 Tax=Niabella soli DSM 19437 RepID=H1NQ92_9SPHI
Alpha-L-rhamnosidase {ECO:0000313|EMBL:KIC95183.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
SCNpilot_expt_1000_bf_scaffold_568_curated_30
unknown

Not on your lists

30051..30335
DNA (285bp) protein (95aa)

This feature has no annotations

Displaying items 1-30 of 76 in total

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