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SCNpilot_expt_1000_bf_scaffold_1964_curated

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1964_curated_1
unknown

Not on your lists

3..137
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1964_curated_2
unknown

Not on your lists

122..343
DNA (222bp) protein (74aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1964_curated_3
unknown

Not on your lists

585..845
DNA (261bp) protein (87aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1964_curated_4
unknown

Not on your lists

845..1258
DNA (414bp) protein (138aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1964_curated_5
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1662..3032)
DNA (1371bp) protein (457aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NPI8_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17420.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1964_curated_6
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3039..3602)
DNA (564bp) protein (188aa)
RNA polymerase n=1 Tax=Niabella aurantiaca RepID=UPI000381A01C
RNA polymerase {ECO:0000313|EMBL:AHF14994.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_1964_curated_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3870..4577)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NPJ0_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17419.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Cell wall anchor domain protein
SCNpilot_expt_1000_bf_scaffold_1964_curated_8
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5138..5971
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C8H6_SPHS2
hypothetical protein; K07090
Uncharacterized protein {ECO:0000313|EMBL:ADZ80401.1}; Flags: Precursor;; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_expt_1000_bf_scaffold_1964_curated_9
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(7666..10206)
DNA (2541bp) protein (847aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036D4938
putative TonB-dependent outer membrane receptor
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_1000_bf_scaffold_1964_curated_10
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10320..10700)
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003760ED5
hypothetical protein
Contig5, whole genome shotgun sequence {ECO:0000313|EMBL:KIO78897.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
SCNpilot_expt_1000_bf_scaffold_1964_curated_11
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10795..13047)
DNA (2253bp) protein (751aa)
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EI95_9SPHI
Contig141, whole genome shotgun sequence {ECO:0000313|EMBL:KIO74741.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
alpha-1,2-mannosidase
SCNpilot_expt_1000_bf_scaffold_1964_curated_12
unknown

Not on your lists

comp(13197..13631)
DNA (435bp) protein (145aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1964_curated_13
CG_Maritim_01, Maritimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14070..15119)
DNA (1050bp) protein (350aa)
Elongation factor G n=1 Tax=Maribacter sp. (strain HTCC2170 / KCCM 42371) RepID=A4ARW7_MARSH
elongation factor G; K02355 elongation factor G
Tax=CG_Maritim_01
SCNpilot_expt_1000_bf_scaffold_1964_curated_14
CG_Maritim_01, Maritimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15691..16227)
DNA (537bp) protein (179aa)
elongation factor G n=1 Tax=Eudoraea adriatica RepID=UPI00035CBBD0
elongation factor G; K02355 elongation factor G
Tax=CG_Maritim_01
SCNpilot_expt_1000_bf_scaffold_1964_curated_15
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16370..18805
DNA (2436bp) protein (812aa)
TonB-dependent receptor n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TAI9_NIAKG
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:AEV98151.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_1964_curated_16
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18817..19737
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PHU5_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU64626.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_1964_curated_17
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

19806..20585
DNA (780bp) protein (260aa)
putative glycoside hydrolase family protein (EC:3.2.1.-)
Beta-glucanase n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9H2K0_9SPHI
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_1000_bf_scaffold_1964_curated_18
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20650..21915)
DNA (1266bp) protein (422aa)
Major facilitator superfamily MFS_1 n=1 Tax=Niabella soli DSM 19437 RepID=H1NK72_9SPHI
MFS transporter {ECO:0000313|EMBL:AHF16991.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
major facilitator superfamily protein
SCNpilot_expt_1000_bf_scaffold_1964_curated_19
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21973..22605)
DNA (633bp) protein (211aa)
Deoxynucleoside kinase n=1 Tax=Niabella soli DSM 19437 RepID=H1NK71_9SPHI
Deoxynucleoside kinase {ECO:0000313|EMBL:AHF16992.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
deoxynucleoside kinase
SCNpilot_expt_1000_bf_scaffold_1964_curated_20
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(22687..25350)
DNA (2664bp) protein (888aa)
Dipeptidyl aminopeptidase/acylaminoacyl-peptidase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LD92_CHLTF
Peptidase S9 {ECO:0000313|EMBL:KDA53180.1}; TaxID=1312852 species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
dipeptidyl aminopeptidase/acylaminoacyl-peptidase
SCNpilot_expt_1000_bf_scaffold_1964_curated_21
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25395..25874)
DNA (480bp) protein (160aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
2-amino-4-hydroxy-6-hydroxymethyldihydropteridin epyrophosphokinase n=1 Tax=Niabella soli DSM 19437 RepID=H1NK70_9SPHI
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000313|EMBL:AHF16993.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1964_curated_22
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25962..27722
DNA (1761bp) protein (587aa)
signal peptide peptidase SppA, 67K type; K04773 protease IV [EC:3.4.21.-]
signal peptidase n=1 Tax=Niabella aurantiaca RepID=UPI00037FFB8F
Signal peptidase {ECO:0000313|EMBL:AHF16994.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1964_curated_23
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

27869..29470
DNA (1602bp) protein (534aa)
Gamma-glutamyltranspeptidase {ECO:0000313|EMBL:AHF14585.1}; EC=2.3.2.2 {ECO:0000313|EMBL:AHF14585.1};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
gamma-glutamyltransferase; K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
gamma-glutamyltranspeptidase n=1 Tax=Niabella aurantiaca RepID=UPI0003657811
SCNpilot_expt_1000_bf_scaffold_1964_curated_24
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

29502..30599
DNA (1098bp) protein (366aa)
Putative uncharacterized protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y1Z6_PEDHD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU05138.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_expt_1000_bf_scaffold_1964_curated_25
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(30636..31073)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NKY1_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF14374.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1964_curated_26
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

31863..32231
DNA (369bp) protein (123aa)
molecular chaperone ClpB n=1 Tax=Niabella aurantiaca RepID=UPI0003795E03
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
ATP-dependent chaperone ClpB; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB
Displaying 26 items

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