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SCNpilot_expt_1000_bf_scaffold_4244_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4244_curated_1
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..954)
DNA (954bp) protein (318aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4507F
Uncharacterized protein {ECO:0000313|EMBL:EQA99316.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4244_curated_2
Brevundimonas abyssalis, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1958..3421
DNA (1464bp) protein (488aa)
Catalase-peroxidase {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451}; Short=CP {ECO:0000256|HAMAP-Rule:MF_01961};; EC=1.11.1.21 {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451};; Peroxidase/catalase {ECO:0000256|HAMAP-Rule:MF_01961}; TaxID=1391729 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas abyssalis TAR-001.;"
katG; catalase/peroxidase; K03782 catalase-peroxidase [EC:1.11.1.21]
Catalase-peroxidase n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U2YRT0_9CAUL
SCNpilot_expt_1000_bf_scaffold_4244_curated_3
unknown

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3548..3817
DNA (270bp) protein (90aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4244_curated_4
unknown

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comp(3854..4057)
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4244_curated_5
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4290..4976)
DNA (687bp) protein (229aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPI6_9SPHN
Colicin I receptor {ECO:0000313|EMBL:AKH41501.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
TonB-dependent receptor-like protein
SCNpilot_expt_1000_bf_scaffold_4244_curated_6
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4973..6958)
DNA (1986bp) protein (662aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B392C8
Colicin I receptor {ECO:0000313|EMBL:AKH41501.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
TonB-dependent receptor
SCNpilot_expt_1000_bf_scaffold_4244_curated_7
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7698..9092
DNA (1395bp) protein (465aa)
Vanillin dehydrogenase n=2 Tax=Sphingomonadaceae RepID=G2IMC6_9SPHN
ligV; vanillin dehydrogenase
Vanillin dehydrogenase {ECO:0000313|EMBL:BAF45815.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
SCNpilot_expt_1000_bf_scaffold_4244_curated_8
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9212..10096)
DNA (885bp) protein (295aa)
Transcriptional regulator, AraC family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5K2_NOVAD
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ABD26871.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_4244_curated_9
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10158..11324
DNA (1167bp) protein (389aa)
p-hydroxybenzoate hydroxylase {ECO:0000313|EMBL:AKH42360.1}; EC=1.14.13.2 {ECO:0000313|EMBL:AKH42360.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
4-hydroxybenzoate 3-monooxygenase (EC:1.14.13.2); K00481 p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2]
p-hydroxybenzoate 3-monooxygenase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L935_9SPHN
SCNpilot_expt_1000_bf_scaffold_4244_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11583..12599)
DNA (1017bp) protein (339aa)
Putative uncharacterized protein n=2 Tax=Sphingomonadaceae RepID=G2IMC7_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65382.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_4244_curated_11
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13633..14130
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000374B18E
Uncharacterized protein {ECO:0000313|EMBL:AHE51836.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein; K07220 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4244_curated_12
R_Elusimicrobia_61_10, Elusimicrobia, Bacteria

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comp(14400..14708)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08QU6_STIAD
Tax=RIFCSPHIGHO2_02_FULL_Elusimicrobia_61_10_curated
SCNpilot_expt_1000_bf_scaffold_4244_curated_13
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15002..15220
DNA (219bp) protein (73aa)
inorganic phosphate transporter n=1 Tax=Sphingomonas RepID=UPI0002888CB4
Inorganic phosphate transporter {ECO:0000313|EMBL:AHE51837.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
phosphate transporter; K03306 inorganic phosphate transporter, PiT family
SCNpilot_expt_1000_bf_scaffold_4244_curated_14
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15371..16012
DNA (642bp) protein (214aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMD7_9SPHN
hypothetical protein; K07002
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65392.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_4244_curated_15
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16171..16914)
DNA (744bp) protein (248aa)
Putative oxidoreductase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMD8_9SPHN
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:BAK65393.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_4244_curated_16
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17000..17173)
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9DHZ7_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:KFD29644.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
SCNpilot_expt_1000_bf_scaffold_4244_curated_17
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17257..18900
DNA (1644bp) protein (548aa)
alpha-glucosidase; K01187 alpha-glucosidase [EC:3.2.1.20]
Alpha-glucosidase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMD9_9SPHN
Alpha-glucosidase {ECO:0000313|EMBL:BAK65394.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_4244_curated_18
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19085..19930
DNA (846bp) protein (282aa)
flagellin n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488F3F
fliC; flagellin; K02406 flagellin
Flagellin {ECO:0000313|EMBL:BAK64971.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_4244_curated_19
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20046..20792)
DNA (747bp) protein (249aa)
glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase {ECO:0000313|EMBL:BAK65398.1}; EC=2.5.1.18 {ECO:0000313|EMBL:BAK65398.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Glutathione S-transferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IME3_9SPHN
SCNpilot_expt_1000_bf_scaffold_4244_curated_20
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20872..21729
DNA (858bp) protein (286aa)
Putative oxidoreductase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IME4_9SPHN
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:BAK65399.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_4244_curated_21
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21779..21868)
DNA (90bp) protein (30aa)
OmpW family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRE1_9SPHN
OmpW family protein; K07275 outer membrane protein
OmpW family protein {ECO:0000313|EMBL:BAK68507.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying 21 items

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