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SCNpilot_expt_1000_bf_scaffold_29271_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_29271_curated_1
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..1476)
DNA (1476bp) protein (492aa)
Putative signaling protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II02_9SPHN
putative signaling protein
Putative signaling protein {ECO:0000313|EMBL:BAK66925.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_29271_curated_2
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1449..2093)
DNA (645bp) protein (215aa)
Putative signaling protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II02_9SPHN
putative signaling protein
Putative signaling protein {ECO:0000313|EMBL:BAK66925.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_29271_curated_3
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2213..2560)
DNA (348bp) protein (116aa)
acyl-CoA synthetase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-]
Acyl-CoA synthase {ECO:0000313|EMBL:BAK66926.1}; EC=2.3.1.86 {ECO:0000313|EMBL:BAK66926.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Acyl-CoA synthase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II03_9SPHN
SCNpilot_expt_1000_bf_scaffold_29271_curated_4
unknown

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3308..4078
DNA (771bp) protein (257aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_29271_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4173..4655
DNA (483bp) protein (161aa)
Regulatory protein RecX n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II04_9SPHN
regulatory protein RecX; K03565 regulatory protein
Regulatory protein RecX {ECO:0000313|EMBL:BAK66927.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_29271_curated_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4664..5209
DNA (546bp) protein (182aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II05_9SPHN
hypothetical protein; K09005 hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66928.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_29271_curated_7
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5271..5513
DNA (243bp) protein (81aa)
putative NADH:ubiquinone oxidoreductase subunit; K00356 NADH dehydrogenase [EC:1.6.99.3]
NADH:ubiquinone oxidoreductase 17.2 kD subunit n=1 Tax=Sphingobium sp. AP49 RepID=J2WCM7_9SPHN
NADH:ubiquinone oxidoreductase 17.2 kD subunit {ECO:0000313|EMBL:EJK80548.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
SCNpilot_expt_1000_bf_scaffold_29271_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5544..5666
DNA (123bp) protein (41aa)
Putative NADH--ubiquinone oxidoreductase subunit n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II06_9SPHN
putative NADH--ubiquinone oxidoreductase subunit
Putative NADH--ubiquinone oxidoreductase subunit {ECO:0000313|EMBL:BAK66929.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_29271_curated_9
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5639..6046)
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000363D765
Uncharacterized protein {ECO:0000313|EMBL:KFD29914.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
Displaying 9 items

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