ggKbase home page

SCNpilot_expt_1000_bf_scaffold_6184_curated

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6184_curated_1
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..437
DNA (435bp) protein (145aa)
Putative Flavin-containing monooxygenase {ECO:0000313|EMBL:CCE00065.1}; EC=1.14.-.- {ECO:0000313|EMBL:CCE00065.1};; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
phenol 2-monooxygenase (EC:1.14.13.7); K03380 phenol 2-monooxygenase [EC:1.14.13.7]
Putative Flavin-containing monooxygenase n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T0T8_9BRAD
SCNpilot_expt_1000_bf_scaffold_6184_curated_2
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

638..1642
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Klebsiella pneumoniae subsp. pneumoniae DSM 30104 RepID=J2LS59_KLEPN
Uncharacterized protein {ECO:0000313|EMBL:EWS63717.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
SCNpilot_expt_1000_bf_scaffold_6184_curated_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1552..2505)
DNA (954bp) protein (318aa)
Acetaldehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01657, ECO:0000256|SAAS:SAAS00042164}; EC=1.2.1.10 {ECO:0000256|HAMAP-Rule:MF_01657, ECO:0000256|SAAS:SAAS00042125};; Acetaldehyde dehydrogenase [acetylating] {ECO:0000256|HAMAP-Rule:MF_01657}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
acetaldehyde dehydrogenase (EC:1.2.1.10); K04073 acetaldehyde dehydrogenase [EC:1.2.1.10]
Acetaldehyde dehydrogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNF2_9SPHN
SCNpilot_expt_1000_bf_scaffold_6184_curated_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2510..3298)
DNA (789bp) protein (263aa)
4-oxalocrotonate decarboxylase (EC:4.1.1.77)
4-oxalocrotonate decarboxylase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W825_9SPHN
4-oxalocrotonate decarboxylase {ECO:0000313|EMBL:ENY79873.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_1000_bf_scaffold_6184_curated_5
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3421..4161
DNA (741bp) protein (247aa)
Transcriptional regulator, IclR family n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZD19_9SPHN
Transcriptional regulator, IclR family {ECO:0000313|EMBL:EGD57495.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
IclR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_6184_curated_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4187..5800)
DNA (1614bp) protein (538aa)
Choline dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPY7_9SPHN
choline dehydrogenase
Choline dehydrogenase {ECO:0000313|EMBL:BAK65815.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_6184_curated_7
unknown

Not on your lists

6065..6397
DNA (333bp) protein (111aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6184_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6277..6705)
DNA (429bp) protein (143aa)
Cytochrome c family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPY5_9SPHN
cytochrome c family protein
Cytochrome c family protein {ECO:0000313|EMBL:BAK65813.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_6184_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6720..8231)
DNA (1512bp) protein (504aa)
Putative FAD-linked oxidase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPY4_9SPHN
putative FAD-linked oxidase
Putative FAD-linked oxidase {ECO:0000313|EMBL:BAK65812.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_6184_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8277..8999)
DNA (723bp) protein (241aa)
Conserved hypothetical membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPY3_9SPHN
hypothetical protein
Conserved hypothetical membrane protein {ECO:0000313|EMBL:BAK65811.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_6184_curated_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8975..9634)
DNA (660bp) protein (220aa)
Major facilitator superfamily protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPY2_9SPHN
major facilitator superfamily protein
Major facilitator superfamily protein {ECO:0000313|EMBL:BAK65810.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying 11 items

View Taxonomy