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SCNpilot_expt_1000_bf_scaffold_9818_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9818_curated_1
Streptomyces sp. HCCB10043, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(590..1627)
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=Streptomyces sp. HCCB10043 RepID=V6UAS9_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:ESU47906.1}; TaxID=1396518 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. HCCB10043.;"
SCNpilot_expt_1000_bf_scaffold_9818_curated_2
unknown

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comp(1721..1909)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9818_curated_3
unknown

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comp(2215..2433)
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9818_curated_4
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2924..3514)
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Actinoplanes globisporus RepID=UPI00036A62D9
Membrane protein, putative {ECO:0000313|EMBL:EYD75595.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9818_curated_5
unknown

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comp(3511..3612)
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9818_curated_6

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comp(3694..3957)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DYV9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD98968.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9818_curated_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4031..5008)
DNA (978bp) protein (326aa)
qor; quinone oxidoreductase (EC:1.6.5.5); K00344 NADPH2:quinone reductase [EC:1.6.5.5] rbh
Alcohol dehydrogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9URC1_9SPHN
Alcohol dehydrogenase {ECO:0000313|EMBL:ENY81025.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_1000_bf_scaffold_9818_curated_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5291..5686)
DNA (396bp) protein (132aa)
Putative transcriptional regulator, LysR family protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9URQ9_9SPHN
Putative transcriptional regulator, LysR family protein {ECO:0000313|EMBL:ENY81024.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_9818_curated_9
unknown

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5961..6110
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9818_curated_10
unknown

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6950..7390
DNA (441bp) protein (147aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9818_curated_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7847..8983
DNA (1137bp) protein (379aa)
ATP phosphoribosyltransferase regulatory subunit {ECO:0000313|EMBL:BAK64801.1}; EC=2.4.2.17 {ECO:0000313|EMBL:BAK64801.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
ATP phosphoribosyltransferase regulatory subunit n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJD1_9SPHN
hisZ; ATP phosphoribosyltransferase; K02502 ATP phosphoribosyltransferase regulatory subunit
SCNpilot_expt_1000_bf_scaffold_9818_curated_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9149..10264)
DNA (1116bp) protein (372aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRF4_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68520.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_9818_curated_13
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10388..10546)
DNA (159bp) protein (53aa)
UPI0003D5F779 related cluster n=1 Tax=unknown RepID=UPI0003D5F779
Peptidase C69 {ECO:0000313|EMBL:ETI63624.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
peptidase U62 family protein; K03568 TldD protein
Displaying 13 items

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