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SCNpilot_expt_1000_bf_scaffold_11987_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_11987_curated_1
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..1330
DNA (1329bp) protein (443aa)
Na+/H+-dicarboxylate symporters n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MXR7_9SPHN
Dicarboxylate/amino acid:cation (Na+ or H+) symporter {ECO:0000313|EMBL:KFG91335.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
dicarboxylate/amino acid:cation (Na+ or H+) symporter
SCNpilot_expt_1000_bf_scaffold_11987_curated_2
unknown

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comp(1527..1919)
DNA (393bp) protein (131aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_11987_curated_3
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2289..3212
DNA (924bp) protein (308aa)
Putative ABC transporter n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJL0_9SPHN
putative ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial
Putative ABC transporter {ECO:0000313|EMBL:BAK64880.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_11987_curated_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3239..3754)
DNA (516bp) protein (172aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJK7_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK64877.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_11987_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3751..4815)
DNA (1065bp) protein (355aa)
ribA; GTP cyclohydrolase II; K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
GTP cyclohydrolase II {ECO:0000256|SAAS:SAAS00129532}; EC=3.5.4.25 {ECO:0000256|SAAS:SAAS00129532};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
GTP cyclohydrolase II n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJK6_9SPHN
SCNpilot_expt_1000_bf_scaffold_11987_curated_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4815..5618)
DNA (804bp) protein (268aa)
xthA; exodeoxyribonuclease III; K01142 exodeoxyribonuclease III [EC:3.1.11.2]
Exodeoxyribonuclease III {ECO:0000313|EMBL:BAK64875.1}; EC=3.1.11.2 {ECO:0000313|EMBL:BAK64875.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Exodeoxyribonuclease III n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJK5_9SPHN
SCNpilot_expt_1000_bf_scaffold_11987_curated_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6024..6686)
DNA (663bp) protein (221aa)
Putative outer membrane lipoprotein carrier protein LolA n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJK4_9SPHN
putative outer membrane lipoprotein carrier protein LolA
Outer-membrane lipoprotein carrier protein {ECO:0000256|SAAS:SAAS00088851}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_11987_curated_8
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6881..7579)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S750_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH50344.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_1000_bf_scaffold_11987_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7728..8141)
DNA (414bp) protein (138aa)
DNA translocase FtsK n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJK3_9SPHN
ftsK; DNA translocase FtsK; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
DNA translocase FtsK {ECO:0000313|EMBL:BAK64873.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying 9 items

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