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SCNpilot_expt_1000_bf_scaffold_10559_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_10559_curated_1
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..928
DNA (927bp) protein (309aa)
hypothetical protein; K06969 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN72_9SPHN
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65520.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_10559_curated_2
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(892..1554)
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036C7FE6
Acetyltransferase family protein {ECO:0000313|EMBL:KEZ14747.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
acetyltransferase
SCNpilot_expt_1000_bf_scaffold_10559_curated_3
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1559..2200)
DNA (642bp) protein (214aa)
Heme exporter protein B n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN73_9SPHN
ccmB; cytochrome c-type biogenesis protein CcmB; K02194 heme exporter protein B
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_10559_curated_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2197..2799)
DNA (603bp) protein (201aa)
ccmA; cytochrome c-type biogenesis ATP-binding export protein CcmA; K02193 heme exporter protein A [EC:3.6.3.41]
Cytochrome c biogenesis ATP-binding export protein CcmA {ECO:0000256|HAMAP-Rule:MF_01707}; EC=3.6.3.41 {ECO:0000256|HAMAP-Rule:MF_01707};; Heme exporter protein A {ECO:0000256|HAMAP-Rule:MF_01707}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Cytochrome c-type biogenesis ATP-binding export protein CcmA n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN74_9SPHN
SCNpilot_expt_1000_bf_scaffold_10559_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2854..3150
DNA (297bp) protein (99aa)
putative pterin-4-alpha-carbinolamine dehydratase; K01724 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
Putative pterin-4-alpha-carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Short=PHS {ECO:0000256|HAMAP-Rule:MF_00434};; EC=4.2.1.96 {ECO:0000256|HAMAP-Rule:MF_00434};; 4-alpha-hydroxy-tetrahydropterin dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Pterin carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN75_9SPHN
SCNpilot_expt_1000_bf_scaffold_10559_curated_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3246..3890)
DNA (645bp) protein (215aa)
DNA-3-methyladenine glycosylase II; K01247 DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
DNA-3-methyladenine glycosylase II {ECO:0000313|EMBL:BAK65524.1}; EC=3.2.2.21 {ECO:0000313|EMBL:BAK65524.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
DNA-3-methyladenine glycosylase II n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN76_9SPHN
SCNpilot_expt_1000_bf_scaffold_10559_curated_7
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4310..4771)
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489891
Uncharacterized protein {ECO:0000313|EMBL:EQB05522.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_10559_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4768..5517)
DNA (750bp) protein (250aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN79_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65527.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_10559_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5565..6461)
DNA (897bp) protein (299aa)
RNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
RNA methyltransferase {ECO:0000313|EMBL:BAK65528.1}; EC=2.1.1.- {ECO:0000313|EMBL:BAK65528.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
RNA methyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN80_9SPHN
Displaying 9 items

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