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SCNpilot_expt_1000_bf_scaffold_11300_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_11300_curated_1
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..809)
DNA (807bp) protein (269aa)
Putative bacteriophage N4 adsorption protein B n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMP6_9SPHN
putative bacteriophage N4 adsorption protein B; K11740 bacteriophage N4 adsorption protein B
Putative bacteriophage N4 adsorption protein B {ECO:0000313|EMBL:BAK67835.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_11300_curated_2
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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951..2213
DNA (1263bp) protein (421aa)
UPI0003D0646E related cluster n=1 Tax=unknown RepID=UPI0003D0646E
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
Na+/H+ antiporter NhaA; K03313 Na+:H+ antiporter, NhaA family
SCNpilot_expt_1000_bf_scaffold_11300_curated_3
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2210..2797
DNA (588bp) protein (196aa)
nadD; putative nicotinate-nucleotide adenylyltransferase; K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMP7_9SPHN
SCNpilot_expt_1000_bf_scaffold_11300_curated_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2826..3248
DNA (423bp) protein (141aa)
Ribosomal silencing factor RsfS n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMP8_9SPHN
hypothetical protein; K09710 ribosome-associated protein
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_11300_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3362..3787
DNA (426bp) protein (142aa)
hypothetical protein; K00783 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMP9_9SPHN
SCNpilot_expt_1000_bf_scaffold_11300_curated_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3791..5116
DNA (1326bp) protein (442aa)
Peptidase M23B family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMQ0_9SPHN
peptidase M23B family protein
Peptidase M23B family protein {ECO:0000313|EMBL:BAK67839.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_11300_curated_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5417..5971
DNA (555bp) protein (185aa)
ctpA; carboxy-terminal-processing protease; K03797 carboxyl-terminal processing protease [EC:3.4.21.102]
Carboxy-terminal-processing protease {ECO:0000313|EMBL:BAK67840.1}; EC=3.4.21.102 {ECO:0000313|EMBL:BAK67840.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Carboxy-terminal-processing protease n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMQ1_9SPHN
SCNpilot_expt_1000_bf_scaffold_11300_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5968..6750
DNA (783bp) protein (261aa)
ctpA; carboxy-terminal-processing protease; K03797 carboxyl-terminal processing protease [EC:3.4.21.102]
Carboxy-terminal-processing protease {ECO:0000313|EMBL:BAK67840.1}; EC=3.4.21.102 {ECO:0000313|EMBL:BAK67840.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Carboxy-terminal-processing protease n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMQ1_9SPHN
SCNpilot_expt_1000_bf_scaffold_11300_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6753..7241
DNA (489bp) protein (163aa)
Putative oxidoreductase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMQ2_9SPHN
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:BAK67841.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_11300_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7238..7774
DNA (537bp) protein (179aa)
ubiquinone biosynthesis monooxygenase Coq7; K06134 ubiquinone biosynthesis monooxygenase Coq7 [EC:1.14.13.-]
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase {ECO:0000256|HAMAP-Rule:MF_01658}; EC=1.14.13.- {ECO:0000256|HAMAP-Rule:MF_01658};; 5-demethoxyubiquinone hydroxylase {ECO:0000256|HAMAP-Rule:MF_01658}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Ubiquinone biosynthesis monooxygenase Coq7 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMQ3_9SPHN
SCNpilot_expt_1000_bf_scaffold_11300_curated_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7793..8353
DNA (561bp) protein (187aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMQ4_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67843.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_11300_curated_12
unknown

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comp(8692..8790)
DNA (99bp) protein (33aa)

This feature has no annotations

Displaying 12 items

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