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SCNpilot_expt_1000_bf_scaffold_6669_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6669_curated_1
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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503..775
DNA (273bp) protein (91aa)
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EYD75955.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
SCNpilot_expt_1000_bf_scaffold_6669_curated_2
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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768..2354
DNA (1587bp) protein (529aa)
Glycosyl transferase family 2 n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UQM6_METS4
Putative methyltransferase {ECO:0000313|EMBL:EYD75956.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
glycosyl transferase family protein
SCNpilot_expt_1000_bf_scaffold_6669_curated_3
unknown

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comp(2415..2645)
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6669_curated_4
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2737..3246
DNA (510bp) protein (170aa)
Polysaccharide deacetylase n=1 Tax=Chroococcidiopsis thermalis PCC 7203 RepID=K9U0B9_9CYAN
Polysaccharide deacetylase {ECO:0000313|EMBL:EYD75957.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
polysaccharide deacetylase
SCNpilot_expt_1000_bf_scaffold_6669_curated_5
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3243..4121
DNA (879bp) protein (293aa)
Glycosyl transferase family 2 n=1 Tax=Chroococcidiopsis thermalis PCC 7203 RepID=K9TZ69_9CYAN
Glycosyltransferase involved in cell wall biogenesis-like protein {ECO:0000313|EMBL:EYD75958.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
family 2 glycosyl transferase
SCNpilot_expt_1000_bf_scaffold_6669_curated_6
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4653..6191)
DNA (1539bp) protein (513aa)
Teichoic acid export ATP-binding protein TagH {ECO:0000313|EMBL:EYD75960.1}; EC=3.6.3.40 {ECO:0000313|EMBL:EYD75960.1};; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 RepID=UPI000347B6A0
putative polysaccharide ABC transporter ATP-binding protein; K09691 lipopolysaccharide transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_6669_curated_7
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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comp(6188..7021)
DNA (834bp) protein (278aa)
ABC-2 type transporter n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EEQ1_9CHLR
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
polysaccharide/polyol phosphate ABC transporter permease; K09690 lipopolysaccharide transport system permease protein
SCNpilot_expt_1000_bf_scaffold_6669_curated_8
Wenxinia marina, Wenxinia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7199..7678)
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI0003820A3C
Wenxma_21, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ67605.1}; TaxID=1123501 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Wenxinia.;" source="Wenxinia marina DSM 24838.;"
NUDIX hydrolase
SCNpilot_expt_1000_bf_scaffold_6669_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7846..10224)
DNA (2379bp) protein (793aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKN7_9SPHN
TonB-dependent receptor-like protein {ECO:0000313|EMBL:BAK67439.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
TonB-dependent receptor-like protein
SCNpilot_expt_1000_bf_scaffold_6669_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10512..11900)
DNA (1389bp) protein (463aa)
Major facilitator superfamily protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKN8_9SPHN
major facilitator superfamily protein
Major facilitator superfamily protein {ECO:0000313|EMBL:BAK67440.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_6669_curated_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12033..12980)
DNA (948bp) protein (316aa)
Putative R-2,4-dichlorophenoxypropionate dioxygenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKP0_9SPHN
putative R-2,4-dichlorophenoxypropionate dioxygenase
Putative R-2,4-dichlorophenoxypropionate dioxygenase {ECO:0000313|EMBL:BAK67442.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_6669_curated_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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13429..14205
DNA (777bp) protein (259aa)
IclR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKP1_9SPHN
IclR family transcriptional regulator
IclR family transcriptional regulator {ECO:0000313|EMBL:BAK67443.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_6669_curated_13
unknown

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comp(14210..14344)
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6669_curated_14
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14367..15113)
DNA (747bp) protein (249aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IML4_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67803.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_6669_curated_15
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15355..15657)
DNA (303bp) protein (101aa)
IclR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMM9_9SPHN
IclR family transcriptional regulator; K02624 IclR family transcriptional regulator, pca regulon regulatory protein
IclR family transcriptional regulator {ECO:0000313|EMBL:BAK67818.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying 15 items

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