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SCNpilot_expt_1000_bf_scaffold_8241_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8241_curated_1
Sphingobium indicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..137
DNA (135bp) protein (45aa)
RNA polymerase sigma-54 factor n=1 Tax=Sphingobium sp. HDIP04 RepID=T0HPM1_9SPHN
RNA polymerase sigma 54 subunit RpoN; K03092 RNA polymerase sigma-54 factor
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
SCNpilot_expt_1000_bf_scaffold_8241_curated_2
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(148..333)
DNA (186bp) protein (62aa)
UPF0391 membrane protein L288_07915 n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0H851_9SPHN
UPF0391 membrane protein BV96_01629 {ECO:0000256|HAMAP-Rule:MF_01361}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8241_curated_3
unknown

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comp(433..552)
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8241_curated_4
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(530..1531)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HSG9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB00499.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
NADH:flavin oxidoreductase
SCNpilot_expt_1000_bf_scaffold_8241_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1733..2635
DNA (903bp) protein (301aa)
Hypothetical membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJK1_9SPHN
hypothetical protein; K15270 S-adenosylmethionine uptake transporter
Hypothetical membrane protein {ECO:0000313|EMBL:BAK64871.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_8241_curated_6
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2635..3156
DNA (522bp) protein (174aa)
GCN5-related N-acetyltransferase n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EWT7_SPHCR
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:AEG49875.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_1000_bf_scaffold_8241_curated_7
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3146..3496
DNA (351bp) protein (117aa)
competence protein TfoX n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CCAB7
Uncharacterized protein {ECO:0000313|EMBL:AHE57379.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
TfoX domain-containing protein
SCNpilot_expt_1000_bf_scaffold_8241_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3614..4690)
DNA (1077bp) protein (359aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR56_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68422.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_8241_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5004..5741
DNA (738bp) protein (246aa)
acnA; aconitate hydratase 1; K01681 aconitate hydratase 1 [EC:4.2.1.3]
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Aconitate hydratase 1 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IR55_9SPHN
Displaying 9 items

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