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SCNpilot_expt_1000_bf_scaffold_8959_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8959_curated_1
unknown

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comp(2..217)
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8959_curated_2
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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620..1582
DNA (963bp) protein (321aa)
phosphoribosylglycinamide formyltransferase; K11175 phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Phosphoribosylglycinamide formyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRW0_9SPHN
SCNpilot_expt_1000_bf_scaffold_8959_curated_3
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1759..2037)
DNA (279bp) protein (93aa)
Putative oxidoreductase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRV9_9SPHN
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:BAK66175.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_8959_curated_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2120..4003)
DNA (1884bp) protein (628aa)
putative ATP-dependent helicase; K03579 ATP-dependent helicase HrpB [EC:3.6.4.13]
Putative ATP-dependent helicase {ECO:0000313|EMBL:BAK66174.1}; EC=3.6.1.- {ECO:0000313|EMBL:BAK66174.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative ATP-dependent helicase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRV8_9SPHN
SCNpilot_expt_1000_bf_scaffold_8959_curated_5
unknown

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4378..4596
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8959_curated_6
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4761..5075
DNA (315bp) protein (105aa)
Membrane protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HSQ6_9SPHN
Membrane protein {ECO:0000313|EMBL:EQB19366.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
small multidrug resistance protein; K11741 quaternary ammonium compound-resistance protein SugE
SCNpilot_expt_1000_bf_scaffold_8959_curated_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5092..6114)
DNA (1023bp) protein (341aa)
octaprenyl-diphosphate synthase; K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90]
Octaprenyl-diphosphate synthase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRV7_9SPHN
Octaprenyl-diphosphate synthase {ECO:0000313|EMBL:BAK66173.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_8959_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6216..6497
DNA (282bp) protein (94aa)
chorismate mutase; K04092 chorismate mutase [EC:5.4.99.5]
Chorismate mutase {ECO:0000313|EMBL:BAK66172.1}; EC=5.4.99.5 {ECO:0000313|EMBL:BAK66172.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Chorismate mutase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRV6_9SPHN
SCNpilot_expt_1000_bf_scaffold_8959_curated_9
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6717..7238)
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Sphingobium sp. YL23 RepID=UPI00039BFB14
Uncharacterized protein {ECO:0000313|EMBL:EQB32934.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
Displaying 9 items

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