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SCNpilot_expt_1000_bf_scaffold_8835_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8835_curated_1
unknown

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comp(1..240)
DNA (240bp) protein (80aa)
Putative uncharacterized protein n=1 Tax=Myxococcus xanthus RepID=Q9APM7_MYXXA
SCNpilot_expt_1000_bf_scaffold_8835_curated_2
unknown

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comp(295..501)
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8835_curated_3
unknown

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751..849
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8835_curated_4
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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1065..2147
DNA (1083bp) protein (361aa)
glycerophosphoryl diester phosphodiesterase; K01126 glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
Glycerophosphoryl diester phosphodiesterase n=1 Tax=Saccharomonospora marina XMU15 RepID=H5XA56_9PSEU
Micromonospora carbonacea strain JXNU-1 contig2, whole genome shotgun sequence {ECO:0000313|EMBL:KIR62913.1}; TaxID=47853 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
SCNpilot_expt_1000_bf_scaffold_8835_curated_5
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2188..2586
DNA (399bp) protein (133aa)
ribosome-binding factor A n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003B7146E
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
rbfA; ribosome-binding factor A; K02834 ribosome-binding factor A
SCNpilot_expt_1000_bf_scaffold_8835_curated_6
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2652..3155
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00035C2987
Uncharacterized protein {ECO:0000313|EMBL:KFD27387.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein; K09965 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8835_curated_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3239..3817
DNA (579bp) protein (193aa)
tdk; thymidine kinase; K00857 thymidine kinase [EC:2.7.1.21]
Thymidine kinase {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544}; EC=2.7.1.21 {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Thymidine kinase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ11_9SPHN
SCNpilot_expt_1000_bf_scaffold_8835_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3906..4307
DNA (402bp) protein (134aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ12_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65840.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_8835_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4377..5315
DNA (939bp) protein (313aa)
truB; tRNA pseudouridine synthase B; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25]
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
tRNA pseudouridine synthase B n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ16_9SPHN
SCNpilot_expt_1000_bf_scaffold_8835_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5332..5601
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ17_9SPHN
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_8835_curated_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5844..6986
DNA (1143bp) protein (381aa)
pnp; polyribonucleotide nucleotidyltransferase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Polyribonucleotide nucleotidyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ19_9SPHN
Displaying 11 items

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