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SCNpilot_expt_1000_bf_scaffold_7424_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7424_curated_1
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..760
DNA (759bp) protein (253aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIL1_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK64691.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_7424_curated_2
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

comp(864..2921)
DNA (2058bp) protein (686aa)
Uncharacterized protein {ECO:0000313|EMBL:KIY14049.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
SCNpilot_expt_1000_bf_scaffold_7424_curated_3
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3099..3662)
DNA (564bp) protein (188aa)
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_7424_curated_4
unknown

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comp(3602..3751)
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7424_curated_5
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

comp(3873..4505)
DNA (633bp) protein (211aa)
Uncharacterized protein {ECO:0000313|EMBL:KIY14050.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
SCNpilot_expt_1000_bf_scaffold_7424_curated_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4763..5539
DNA (777bp) protein (259aa)
NAD-specific glutamate dehydrogenase; K15371 glutamate dehydrogenase [EC:1.4.1.2]
NAD-specific glutamate dehydrogenase {ECO:0000313|EMBL:BAK64690.1}; EC=1.4.1.2 {ECO:0000313|EMBL:BAK64690.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
NAD-specific glutamate dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIL0_9SPHN
SCNpilot_expt_1000_bf_scaffold_7424_curated_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5555..6232)
DNA (678bp) protein (226aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000313|EMBL:BAK64689.1}; EC=5.2.1.8 {ECO:0000313|EMBL:BAK64689.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIK9_9SPHN
peptidyl-prolyl cis-trans isomerase
SCNpilot_expt_1000_bf_scaffold_7424_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6418..7320)
DNA (903bp) protein (301aa)
acs; acetyl-CoA synthetase; K01895 acetyl-CoA synthetase [EC:6.2.1.1]
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000256|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000256|HAMAP-Rule:MF_01123}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Acetyl-coenzyme A synthetase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIK7_9SPHN
SCNpilot_expt_1000_bf_scaffold_7424_curated_9
GWA2_Desulfovibrionales_65_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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7696..7965
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FS15_9BURK
Tax=GWA2_Desulfovibrionales_65_9_curated
SCNpilot_expt_1000_bf_scaffold_7424_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8495..9004)
DNA (510bp) protein (170aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIK6_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK64686.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_7424_curated_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9101..9745)
DNA (645bp) protein (215aa)
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIK5_9SPHN
putative hydrolase
Putative hydrolase {ECO:0000313|EMBL:BAK64685.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_7424_curated_12
unknown

Not on your lists

9966..10313
DNA (348bp) protein (116aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7424_curated_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10246..10746)
DNA (501bp) protein (167aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIK3_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK64683.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_7424_curated_14
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10733..11206)
DNA (474bp) protein (158aa)
ptsN; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69]
PTS IIA-like nitrogen-regulatory protein PtsN {ECO:0000313|EMBL:BAK64682.1}; EC=2.7.1.69 {ECO:0000313|EMBL:BAK64682.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
PTS IIA-like nitrogen-regulatory protein PtsN n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIK2_9SPHN
SCNpilot_expt_1000_bf_scaffold_7424_curated_15
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11408..12001)
DNA (594bp) protein (198aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIK1_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK64681.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_7424_curated_16
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12075..12518)
DNA (444bp) protein (148aa)
dnaQ; DNA polymerase III subunit epsilon; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7]
DNA polymerase III epsilon subunit {ECO:0000313|EMBL:BAK64680.1}; EC=2.7.7.7 {ECO:0000313|EMBL:BAK64680.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
DNA polymerase III epsilon subunit n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIK0_9SPHN
SCNpilot_expt_1000_bf_scaffold_7424_curated_17
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12482..12760)
DNA (279bp) protein (93aa)
dnaQ; DNA polymerase III subunit epsilon; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7]
DNA polymerase III epsilon subunit {ECO:0000313|EMBL:BAK64680.1}; EC=2.7.7.7 {ECO:0000313|EMBL:BAK64680.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
DNA polymerase III epsilon subunit n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIK0_9SPHN
SCNpilot_expt_1000_bf_scaffold_7424_curated_18
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12789..13064)
DNA (276bp) protein (92aa)
coaE; dephospho-CoA kinase; K00859 dephospho-CoA kinase [EC:2.7.1.24]
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Dephospho-CoA kinase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIJ9_9SPHN
Displaying 18 items

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