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SCNpilot_expt_1000_bf_scaffold_9093_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9093_curated_1
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..456)
DNA (456bp) protein (152aa)
2-octaprenyl-6-methoxyphenol hydroxylase; K03185 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
2-octaprenyl-6-methoxyphenol hydroxylase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILZ5_9SPHN
2-octaprenyl-6-methoxyphenol hydroxylase {ECO:0000313|EMBL:BAK67738.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_9093_curated_2
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(426..1106)
DNA (681bp) protein (227aa)
2-octaprenyl-6-methoxyphenol hydroxylase; K03185 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
2-octaprenyl-6-methoxyphenol hydroxylase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILZ5_9SPHN
2-octaprenyl-6-methoxyphenol hydroxylase {ECO:0000313|EMBL:BAK67738.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_9093_curated_3
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1178..1960)
DNA (783bp) protein (261aa)
ABC transporter ATP-binding protein; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
ABC transporter ATP-binding protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILZ6_9SPHN
ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAK67739.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_9093_curated_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1960..2928)
DNA (969bp) protein (323aa)
ABC transporter permease protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILZ7_9SPHN
ABC transporter permease; K02015 iron complex transport system permease protein
ABC transporter permease protein {ECO:0000313|EMBL:BAK67740.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_9093_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2925..3680)
DNA (756bp) protein (252aa)
ABC transporter substrate binding protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILZ8_9SPHN
ABC transporter substrate binding protein; K02016 iron complex transport system substrate-binding protein
ABC transporter substrate binding protein {ECO:0000313|EMBL:BAK67741.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_9093_curated_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3734..5611)
DNA (1878bp) protein (626aa)
Putative vitamin B12 transporter BtuB n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILZ9_9SPHN
btuB; putative vitamin B12 transporter BtuB; K02014 iron complex outermembrane recepter protein
Putative vitamin B12 transporter BtuB {ECO:0000313|EMBL:BAK67742.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_9093_curated_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5938..6558)
DNA (621bp) protein (207aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMH1_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67760.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_9093_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6689..6994)
DNA (306bp) protein (102aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMH0_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67759.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_9093_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7027..7392)
DNA (366bp) protein (122aa)
Response regulator receiver protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMG9_9SPHN
response regulator receiver protein; K03413 two-component system, chemotaxis family, response regulator CheY
Response regulator receiver protein {ECO:0000313|EMBL:BAK67758.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_9093_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7686..8564)
DNA (879bp) protein (293aa)
LysR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMG8_9SPHN
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:BAK67757.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_9093_curated_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9355..10902
DNA (1548bp) protein (516aa)
putative M13 family peptidase; K07386 putative endopeptidase [EC:3.4.24.-]
Putative M13 family peptidase {ECO:0000313|EMBL:BAK67756.1}; EC=3.4.-.- {ECO:0000313|EMBL:BAK67756.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative M13 family peptidase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMG7_9SPHN
SCNpilot_expt_1000_bf_scaffold_9093_curated_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11428..11898
DNA (471bp) protein (157aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMG5_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67754.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_9093_curated_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12653..13543)
DNA (891bp) protein (297aa)
Conserved hypothetical membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM00_9SPHN
hypothetical protein; K07148 uncharacterized protein
Conserved hypothetical membrane protein {ECO:0000313|EMBL:BAK67743.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying 13 items

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