ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1435_curated

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1435_curated_1
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..345)
DNA (345bp) protein (115aa)
Uncharacterized protein n=2 Tax=Ketogulonicigenium vulgare RepID=E3F5C5_KETVY
hypothetical protein
Single-stranded DNA endonuclease {ECO:0000313|EMBL:KGJ02885.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
SCNpilot_expt_1000_bf_scaffold_1435_curated_2
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(342..1310)
DNA (969bp) protein (323aa)
Uncharacterized protein n=2 Tax=Ketogulonicigenium vulgare RepID=E3F5C4_KETVY
Antirestriction protein; ArdC
Antirestriction protein ArdC {ECO:0000313|EMBL:AEM42447.1}; TaxID=759362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare (strain WSH-001).;"
SCNpilot_expt_1000_bf_scaffold_1435_curated_3
unknown

Not on your lists

comp(1921..2334)
DNA (414bp) protein (138aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1435_curated_4
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3402..4685
DNA (1284bp) protein (428aa)
IQ calmodulin-binding-domain protein n=2 Tax=Ketogulonicigenium vulgare RepID=E3F5C2_KETVY
IQ calmodulin-binding-domain protein
IQ calmodulin-binding-domain protein {ECO:0000313|EMBL:ADO44166.1}; TaxID=880591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare (strain Y25).;"
SCNpilot_expt_1000_bf_scaffold_1435_curated_5
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4886..6946
DNA (2061bp) protein (687aa)
Uncharacterized protein n=1 Tax=Ketogulonicigenium vulgare (strain Y25) RepID=E3F5C0_KETVY
DNA helicase {ECO:0000313|EMBL:KGJ01952.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1435_curated_6
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6939..8699
DNA (1761bp) protein (587aa)
DNA helicase II (EC:3.6.1.-); K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
DNA helicase II n=2 Tax=Ketogulonicigenium vulgare RepID=E3F5B9_KETVY
DNA helicase II {ECO:0000313|EMBL:KGJ01953.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
SCNpilot_expt_1000_bf_scaffold_1435_curated_7
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8918..9577
DNA (660bp) protein (220aa)
Uncharacterized protein n=2 Tax=Ketogulonicigenium vulgare RepID=E3F5B8_KETVY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEM42441.1}; TaxID=759362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare (strain WSH-001).;"
SCNpilot_expt_1000_bf_scaffold_1435_curated_8
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9574..10527
DNA (954bp) protein (318aa)
Uncharacterized protein n=2 Tax=Ketogulonicigenium vulgare RepID=E3F5B7_KETVY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO44161.1}; TaxID=880591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare (strain Y25).;"
SCNpilot_expt_1000_bf_scaffold_1435_curated_9
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10637..11419
DNA (783bp) protein (261aa)
Uncharacterized protein n=2 Tax=Ketogulonicigenium vulgare RepID=E3F5B6_KETVY
Uncharacterized protein {ECO:0000313|EMBL:KGJ01955.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1435_curated_10
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11843..12043
DNA (201bp) protein (67aa)
Prevent-host-death family protein n=1 Tax=Ketogulonicigenium vulgare (strain WSH-001) RepID=F9YAN5_KETVW
Prevent-host-death family protein
Prevent-host-death family protein {ECO:0000313|EMBL:AEM42437.1}; TaxID=759362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare (strain WSH-001).;"
SCNpilot_expt_1000_bf_scaffold_1435_curated_11
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12081..13838
DNA (1758bp) protein (586aa)
Resolvase domain protein n=1 Tax=Ketogulonicigenium vulgare (strain WSH-001) RepID=F9YAN4_KETVW
Resolvase {ECO:0000313|EMBL:KGJ03415.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
Resolvase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1435_curated_12
unknown

Not on your lists

comp(13810..13998)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1435_curated_13
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14002..16083)
DNA (2082bp) protein (694aa)
type I restriction-modification system, R subunit (EC:3.1.21.3); K01153 type I restriction enzyme, R subunit [EC:3.1.21.3]
Type I restriction-modification system, R subunit n=1 Tax=Phaeospirillum fulvum MGU-K5 RepID=S9S8H1_PHAFV
Restriction endonuclease subunit R {ECO:0000313|EMBL:KFL26599.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_expt_1000_bf_scaffold_1435_curated_14
unknown

Not on your lists

16187..16294
DNA (108bp) protein (36aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1435_curated_15
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16438..17433
DNA (996bp) protein (332aa)
Uncharacterized protein {ECO:0000313|EMBL:KFB70332.1}; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-91.;"
SCNpilot_expt_1000_bf_scaffold_1435_curated_16
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17370..19469)
DNA (2100bp) protein (700aa)
Uncharacterized protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TTG4_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KFL26600.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1435_curated_17
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19481..20311)
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Phaeospirillum fulvum MGU-K5 RepID=S9SA79_PHAFV
Membrane protein {ECO:0000313|EMBL:KFL26601.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1435_curated_18
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20308..21114)
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2) RepID=I7KYR1_METBM rbh
Uncharacterized protein {ECO:0000313|EMBL:KFL26602.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1435_curated_19
Comamonadaceae bacterium B1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21117..22304)
DNA (1188bp) protein (396aa)
restriction modification system DNA specificity subunit; K01154 type I restriction enzyme, S subunit [EC:3.1.21.3]
Putative uncharacterized protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9R120_9RHOB
Restriction endonuclease S subunits {ECO:0000313|EMBL:BAO82233.1}; TaxID=1458426 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium B1.;"
SCNpilot_expt_1000_bf_scaffold_1435_curated_20
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22301..23839)
DNA (1539bp) protein (513aa)
Type I restriction modification system M subunit; K03427 type I restriction enzyme M protein [EC:2.1.1.72]
Type I restriction modification system M subunit (Site-specific DNA-methyltransferase subunit) n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IUT8_POLGS
Type I restriction modification system M subunit (Site-specific DNA-methyltransferase subunit) {ECO:0000313|EMBL:ADZ69140.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_expt_1000_bf_scaffold_1435_curated_21
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23895..24773)
DNA (879bp) protein (293aa)
Transcriptional regulator n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IUT7_POLGS
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:KFL26606.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_expt_1000_bf_scaffold_1435_curated_22
Gluconacetobacter sp. SXCC-1, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25029..25949
DNA (921bp) protein (307aa)
Thyroid receptor-interacting protein 13 n=1 Tax=Gluconacetobacter sp. SXCC-1 RepID=F3S5R6_9PROT
Thyroid receptor-interacting protein 13 {ECO:0000313|EMBL:EGG77994.1}; TaxID=1004836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter sp. SXCC-1.;"
ATPase central domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1435_curated_23
unknown

Not on your lists

comp(25904..26077)
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1435_curated_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26420..26923
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037F3ECB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ06406.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_expt_1000_bf_scaffold_1435_curated_25
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26920..27822
DNA (903bp) protein (301aa)
DNA polymerase subunit beta n=1 Tax=Rhizobium leguminosarum RepID=UPI000377BFC1
Uncharacterized protein {ECO:0000313|EMBL:EHH03913.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1435_curated_26
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27859..29373
DNA (1515bp) protein (505aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X0C0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ34321.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1435_curated_27
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29950..30546
DNA (597bp) protein (199aa)
Transcriptional regulator, TetR family n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B786_PARDP
TetR family transcriptional regulator {ECO:0000313|EMBL:KGJ04310.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1435_curated_28
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30550..31695
DNA (1146bp) protein (382aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B785_PARDP
RND transporter {ECO:0000313|EMBL:KGJ04309.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
RND family efflux transporter MFP subunit; K02005 HlyD family secretion protein
SCNpilot_expt_1000_bf_scaffold_1435_curated_29
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31692..32828
DNA (1137bp) protein (379aa)
Uncharacterized protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B784_PARDP
ABC transporter permease {ECO:0000313|EMBL:KGJ04308.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
hypothetical protein; K02004 putative ABC transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1435_curated_30
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32834..33526
DNA (693bp) protein (231aa)
ABC transporter related protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B783_PARDP
ABC transporter {ECO:0000313|EMBL:KGJ04307.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
ABC transporter; K02003 putative ABC transport system ATP-binding protein
Displaying items 1-30 of 55 in total

View Taxonomy